Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 0.0e+00 1120.9 564 100.0
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.9e-237 825.9 529 79.0
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-204 716.5 534 68.7
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 5.5e-200 701.4 538 66.0
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 6.7e-190 667.9 531 64.8
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 5.3e-187 658.3 552 61.1
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 8.0e-183 644.4 513 64.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 7.5e-181 637.9 488 65.0
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 5.3e-179 631.7 529 60.9
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.7e-178 627.9 507 60.9
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 5.0e-177 625.2 525 59.2
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 4.2e-176 622.1 506 62.5
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.7e-175 618.6 529 58.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 6.1e-175 618.2 533 60.0
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 3.0e-174 615.9 514 59.7
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 6.8e-174 614.8 555 57.7
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.8e-174 614.4 492 62.6
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.5e-173 613.6 574 56.1
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 3.4e-173 612.5 567 55.6
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 4.4e-173 612.1 521 59.7
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.7e-173 611.7 518 58.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 7.5e-173 611.3 546 57.9
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 9.8e-173 610.9 490 61.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.8e-172 609.4 559 56.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.7e-172 609.0 487 60.8
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.7e-172 609.0 510 59.6
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.4e-171 607.1 551 56.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 7.0e-171 604.7 492 61.2
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.6e-170 603.6 545 57.8
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.6e-170 603.6 564 56.6
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.6e-170 603.6 495 61.4
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.7e-170 602.8 495 61.2
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.5e-170 602.1 472 61.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 5.9e-170 601.7 483 61.3
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 7.7e-170 601.3 500 59.6
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.0e-169 600.9 500 59.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.7e-169 600.1 563 55.1
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.8e-169 599.0 488 59.8
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.1e-168 597.4 494 59.3
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 2.5e-168 596.3 539 55.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.5e-168 596.3 499 59.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 7.2e-168 594.7 494 59.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.2e-167 594.0 500 60.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.1e-167 593.2 535 57.2
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.1e-167 591.7 539 56.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.8e-166 590.1 559 54.9
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.0e-166 589.3 543 55.2
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.2e-165 587.4 553 54.2
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.0e-165 586.6 542 56.1
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 5.7e-165 585.1 488 58.4
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 5.7e-165 585.1 512 56.8
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.2e-164 583.2 547 56.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 3.7e-164 582.4 488 58.4
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.7e-164 582.4 491 59.1
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-163 580.9 489 58.9
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-163 580.5 474 60.5
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.4e-163 579.7 595 51.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.1e-163 579.3 520 55.8
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 4.1e-163 578.9 498 59.0
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 5.4e-163 578.6 489 57.3
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.6e-162 577.0 512 56.1
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-161 573.5 530 56.0
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.6e-161 571.6 492 57.9
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-160 570.1 537 52.5
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-160 568.9 486 58.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.5e-160 567.8 521 55.7
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.1e-159 566.6 502 56.0
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.8e-159 566.2 524 53.8
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.6e-159 565.8 542 53.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-157 560.8 505 55.4
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.5e-157 560.5 487 57.1
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.8e-157 558.5 489 57.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.1e-155 554.3 486 58.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.4e-155 553.1 488 58.0
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 9.2e-155 551.2 492 56.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.6e-154 550.4 499 56.3
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.8e-154 548.1 551 52.8
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.6e-151 540.4 485 55.7
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-151 540.4 493 55.4
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.6e-151 539.3 511 53.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-150 537.7 506 52.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.3e-150 536.6 484 56.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.6e-149 533.1 587 48.6
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 4.9e-148 528.9 549 51.7
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.4e-147 527.3 497 53.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.6e-146 522.3 417 61.6
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 6.0e-146 521.9 493 52.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.3e-145 520.0 470 54.7
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-144 516.9 501 53.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.8e-143 513.1 528 50.8
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 9.9e-141 504.6 517 51.6
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-140 502.7 514 51.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 4.9e-140 502.3 552 48.2
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.3e-140 501.5 427 59.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-139 501.1 515 53.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-139 500.0 491 52.5
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 9.2e-139 498.0 512 50.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.3e-136 489.6 458 52.8
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.9e-132 475.7 359 65.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.2e-131 473.0 509 48.5
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.2e-131 472.6 481 51.8
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 9.6e-128 461.5 511 49.7
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.1e-126 458.0 507 51.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.1e-126 458.0 508 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 9.0e-126 454.9 506 46.2
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-125 454.1 509 48.9
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 9.9e-125 451.4 506 46.8
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.2e-124 450.3 394 55.3
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-124 449.9 494 50.2
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 6.4e-124 448.7 506 46.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-123 447.6 454 54.0
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.7e-121 440.7 474 49.8
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.7e-121 438.3 443 53.3
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.0e-117 427.2 393 53.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.0e-113 414.8 395 51.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.0e-109 400.6 330 61.8
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.5e-109 399.4 345 59.1
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-106 391.0 455 45.5
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.0e-106 389.0 294 65.3
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.3e-103 381.3 330 58.8
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 8.2e-103 378.6 323 58.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.9e-102 375.6 645 35.2
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.4e-101 373.2 394 52.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 6.0e-98 362.5 328 56.4
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 3.7e-95 353.2 408 48.0
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-95 352.4 341 51.9
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.7e-92 344.4 440 45.2
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.5e-91 340.5 341 53.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.3e-84 318.2 245 62.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-81 307.8 232 60.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 9.1e-78 295.4 445 39.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-75 288.1 233 55.8
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.4e-72 275.8 277 50.2
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.8e-68 263.5 348 42.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.1e-67 261.9 603 30.2
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-61 241.1 268 51.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.7e-60 238.0 148 72.3
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.6e-58 230.3 452 34.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.1e-54 218.8 181 60.2
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.1e-54 216.9 169 59.2
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.4e-54 216.5 226 49.6
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.1e-54 215.7 226 49.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 3.8e-52 210.3 155 62.6
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.2e-51 206.8 148 60.1
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-46 192.2 160 54.4
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 8.0e-42 176.0 125 64.0
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-40 172.2 161 50.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-40 171.0 195 46.2
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.6e-37 160.2 117 61.5
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-36 158.7 130 56.9
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-33 149.1 178 46.6
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-32 145.2 107 58.9
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-29 135.6 191 41.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-28 131.7 143 50.3
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-28 131.3 170 40.6
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.3e-28 131.3 148 41.9
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.6e-21 107.1 76 60.5
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.2e-17 93.6 122 38.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.6e-13 80.5 74 51.4
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-12 79.0 74 51.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.5e-11 75.5 81 44.4
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.9e-07 61.2 51 54.9


User provided reference genes

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