Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 5.4e-257 890.6 480 100.0
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 4.0e-143 512.3 539 59.4
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 5.3e-143 511.9 521 60.1
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 5.8e-142 508.4 501 61.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 6.3e-72 275.8 561 39.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.9e-69 266.9 519 40.8
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 6.6e-69 265.8 564 38.1
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.6e-67 261.2 557 38.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 4.4e-65 253.1 559 35.8
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.7e-65 252.7 550 36.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 9.8e-65 251.9 561 38.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.3e-64 251.5 557 36.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 6.4e-64 249.2 564 37.1
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 3.0e-61 240.4 593 35.2
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.0e-61 239.6 557 35.4
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.1e-59 234.2 508 37.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.8e-58 231.1 552 35.7
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 8.9e-58 228.8 556 34.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.2e-57 228.4 561 33.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.2e-57 228.4 601 34.8
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.3e-56 224.9 558 35.3
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.7e-56 224.6 552 35.3
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.2e-56 224.2 494 39.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.9e-56 223.8 559 34.9
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 2.9e-56 223.8 463 37.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.9e-56 223.8 589 36.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 8.3e-56 222.2 536 36.0
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 8.3e-56 222.2 541 33.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 8.3e-56 222.2 555 34.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.1e-55 221.9 522 35.1
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 3.2e-55 220.3 502 37.3
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.2e-54 218.4 610 34.1
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 3.5e-54 216.9 564 37.6
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.5e-54 216.9 564 34.9
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.0e-54 216.1 525 35.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 6.0e-54 216.1 556 33.3
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 7.8e-54 215.7 432 37.7
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-53 214.9 556 33.6
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.3e-53 214.2 537 35.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.0e-53 213.8 561 33.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-53 213.4 392 42.6
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 6.6e-53 212.6 538 33.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.5e-52 211.5 564 33.3
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.5e-52 211.5 426 37.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.9e-52 211.1 528 34.3
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 7.3e-52 209.1 518 34.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 9.5e-52 208.8 537 33.9
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.6e-51 208.0 547 34.0
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.6e-51 208.0 561 33.2
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.4e-50 204.9 539 34.7
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.8e-50 204.5 548 32.3
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.3e-50 204.1 476 35.1
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.3e-50 204.1 485 35.3
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 8.9e-50 202.2 437 35.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.2e-49 201.8 543 34.4
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 4.4e-49 199.9 541 32.2
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.3e-48 198.4 522 35.2
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.4e-48 196.1 460 36.5
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-47 194.5 459 35.1
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-47 194.5 459 35.1
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.2e-46 191.8 541 32.2
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.6e-46 191.4 570 32.3
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.1e-46 191.0 546 31.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.7e-46 190.7 551 32.1
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.7e-45 188.0 528 31.8
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 2.3e-45 187.6 554 34.1
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.3e-45 187.6 557 31.8
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.0e-45 187.2 579 34.9
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 3.9e-45 186.8 551 32.8
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.9e-45 186.8 554 33.8
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.5e-44 184.9 515 33.4
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.6e-44 183.0 539 31.5
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.3e-44 182.6 532 30.1
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.6e-43 181.4 502 34.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.1e-43 181.0 546 32.4
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.1e-43 181.0 505 34.1
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 3.6e-43 180.3 502 33.3
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.1e-42 177.2 539 31.5
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.5e-41 174.9 368 35.9
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.4e-41 173.7 347 37.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.4e-41 173.3 405 36.3
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.6e-41 172.6 582 31.6
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 9.9e-41 172.2 413 33.9
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 9.9e-41 172.2 460 32.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.7e-40 170.2 570 29.8
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 3.7e-40 170.2 543 31.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.1e-38 164.5 384 36.2
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.3e-37 161.8 507 32.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 3.0e-37 160.6 448 32.4
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.1e-37 159.8 586 28.3
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.5e-36 157.5 402 32.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.5e-33 148.3 558 29.2
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.4e-33 147.1 551 29.4
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 9.9e-33 145.6 238 42.0
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-32 144.8 445 32.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.9e-32 144.1 499 31.3
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 4.9e-32 143.3 399 33.3
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.1e-31 142.1 604 30.0
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.3e-29 134.4 588 30.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.1e-29 133.3 344 35.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.5e-28 131.7 328 37.2
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.5e-28 131.0 508 27.6
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 4.3e-28 130.2 402 30.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 8.1e-27 125.9 464 28.7
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.4e-25 120.2 546 28.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.8e-24 117.1 480 27.1
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 8.4e-24 115.9 428 29.7
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 7.1e-23 112.8 457 29.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.6e-22 111.7 455 29.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.6e-22 111.7 519 26.6
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.5e-22 110.5 468 28.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.0e-22 109.8 287 35.5
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.3e-21 107.8 305 30.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 3.9e-21 107.1 424 28.8
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-20 105.5 424 28.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.9e-20 104.8 363 31.1
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 4.3e-20 103.6 364 31.0
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 8.1e-19 99.4 432 28.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-18 98.6 436 29.4
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.4e-18 97.8 185 39.5
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.4e-18 97.8 199 40.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.0e-18 97.1 473 28.1
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.5e-17 93.6 277 31.0
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 5.8e-17 93.2 525 26.9
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.8e-16 90.5 434 28.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 3.8e-16 90.5 525 25.9
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 6.4e-16 89.7 467 23.8
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.4e-15 88.6 333 28.5
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.2e-15 87.0 218 35.8
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 4.2e-15 87.0 338 30.2
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.2e-14 85.5 378 28.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.5e-14 84.0 430 25.1
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 7.9e-14 82.8 78 52.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.6e-12 76.6 128 34.4
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-07 62.4 271 28.4
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 1.1e-07 62.4 145 34.5
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 1.4e-07 62.0 228 33.3
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 7.1e-07 59.7 314 23.9
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 7.9e-06 56.2 325 24.3


User provided reference genes

Program Settings