Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.2e-194 682.2 354 100.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 9.8e-171 603.6 364 87.1
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.2e-168 596.7 341 91.5
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 9.8e-163 577.0 316 93.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.6e-157 559.7 345 82.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.8e-156 556.2 334 84.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.1e-156 555.4 361 79.8
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 8.9e-156 553.9 353 81.3
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.5e-155 553.1 337 84.6
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.5e-155 553.1 345 82.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 7.5e-155 550.8 355 81.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-154 550.1 331 85.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-154 550.1 350 80.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.7e-154 549.7 338 83.1
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.7e-154 549.7 347 81.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.2e-154 549.3 341 82.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.9e-154 548.1 350 82.3
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.1e-153 547.0 357 79.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.4e-153 546.6 361 79.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-153 546.6 339 84.4
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.9e-153 546.2 334 82.9
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.2e-153 545.4 333 83.2
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.1e-153 545.0 330 82.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.1e-153 545.0 326 85.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 7.0e-153 544.3 328 85.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 9.2e-153 543.9 362 79.6
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 9.2e-153 543.9 329 85.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.6e-152 543.1 330 82.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.0e-152 542.7 345 80.9
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.0e-152 542.7 347 80.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.0e-152 542.7 330 82.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.7e-152 542.3 360 78.3
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 2.7e-152 542.3 333 82.3
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.5e-152 542.0 333 82.3
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 4.6e-152 541.6 324 85.5
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 7.8e-152 540.8 352 78.4
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-151 540.4 330 83.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.3e-151 540.0 327 83.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.3e-151 540.0 333 83.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.7e-151 539.7 345 80.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.9e-151 538.5 333 81.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.9e-151 538.5 360 79.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 5.0e-151 538.1 330 83.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 5.0e-151 538.1 343 79.6
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 8.6e-151 537.3 347 79.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 8.6e-151 537.3 324 83.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.9e-150 536.2 353 77.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.9e-150 536.2 358 77.9
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.9e-150 536.2 344 80.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.9e-150 536.2 332 82.5
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.5e-150 535.8 332 81.6
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.5e-150 535.8 324 83.6
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.5e-150 535.8 328 82.9
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.5e-150 535.8 330 82.1
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.3e-150 535.4 353 78.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.3e-150 535.4 342 79.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.3e-150 535.4 327 82.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.3e-150 535.4 329 81.8
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.3e-150 535.4 329 81.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 4.3e-150 535.0 347 79.3
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 7.3e-150 534.3 352 78.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 7.3e-150 534.3 358 77.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 7.3e-150 534.3 333 81.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 9.5e-150 533.9 345 78.8
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-149 532.7 358 78.2
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.1e-149 532.7 342 80.1
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.8e-149 532.3 327 82.6
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.7e-149 531.6 347 78.4
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 6.2e-149 531.2 359 77.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 8.1e-149 530.8 340 81.5
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.8e-148 529.6 374 74.3
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.1e-148 528.9 332 80.7
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.0e-148 528.5 343 79.6
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 4.0e-148 528.5 332 80.7
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.2e-148 528.1 353 77.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.9e-148 527.3 371 73.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 8.9e-148 527.3 330 81.2
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.9e-148 527.3 338 80.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.2e-147 526.9 366 74.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-147 526.9 351 76.9
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 5.8e-147 524.6 348 78.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 5.8e-147 524.6 350 78.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.3e-146 523.5 343 78.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.3e-146 523.5 331 81.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-146 523.1 343 79.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.7e-146 523.1 343 79.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-146 523.1 351 76.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-146 523.1 335 78.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.2e-146 522.7 343 78.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.2e-146 522.7 350 77.7
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.9e-146 522.3 342 79.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.9e-146 521.5 350 77.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.9e-146 521.5 330 79.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 6.4e-146 521.2 339 79.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 8.3e-146 520.8 343 78.4
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 8.3e-146 520.8 392 71.2
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-145 519.6 343 78.4
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.4e-145 519.2 342 78.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.2e-145 518.8 330 79.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.2e-145 518.8 330 79.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 4.1e-145 518.5 343 78.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.1e-145 518.5 343 78.7
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-145 518.5 343 78.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.1e-145 518.5 336 78.6
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 5.4e-145 518.1 299 86.0
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 7.1e-145 517.7 343 78.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 7.1e-145 517.7 343 78.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-144 516.9 343 78.4
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-144 516.9 336 80.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.6e-144 516.5 343 78.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.6e-144 516.5 343 78.1
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.1e-144 516.2 435 64.8
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.7e-144 515.8 345 78.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 4.6e-144 515.0 343 77.8
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 6.0e-144 514.6 354 76.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.7e-143 513.1 299 84.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 3.0e-143 512.3 354 73.4
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.6e-143 510.8 354 73.4
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.9e-142 509.6 341 77.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-142 509.6 327 78.6
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.5e-142 507.3 330 78.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.5e-142 507.3 370 71.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.6e-141 506.5 347 75.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.6e-141 506.5 341 76.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-139 499.2 326 78.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-139 499.2 326 78.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.6e-139 499.2 350 75.4
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.8e-139 498.0 341 74.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.4e-138 494.6 341 74.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.9e-137 493.0 318 77.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-137 493.0 287 86.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.9e-137 493.0 339 75.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.1e-137 491.9 287 85.4
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 5.6e-134 481.5 338 73.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.1e-133 479.6 325 74.8
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.1e-133 479.6 354 69.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.8e-133 479.2 280 85.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.6e-133 478.8 343 74.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.6e-131 471.1 330 72.7
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.2e-130 469.5 322 74.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 3.8e-130 468.8 350 72.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.4e-129 466.1 328 72.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.2e-129 465.7 351 67.5
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 6.0e-128 461.5 299 77.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.7e-127 459.9 337 70.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 7.3e-126 454.5 300 75.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.1e-121 440.7 296 78.4
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 4.6e-112 408.7 327 66.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 4.3e-110 402.1 339 62.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-105 387.1 250 79.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-102 377.5 251 78.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.6e-99 366.3 257 74.7
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.2e-97 359.4 290 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.2e-90 336.7 229 76.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 3.8e-74 282.7 272 59.2
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 5.7e-70 268.9 310 51.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.0e-67 260.4 197 74.6
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-66 257.7 342 47.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 3.8e-66 256.1 194 72.7
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 8.6e-50 201.8 112 87.5
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.9e-44 184.1 113 81.4
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.6e-35 154.5 169 57.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.1e-35 154.1 183 55.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.1e-35 154.1 183 55.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.0e-34 150.2 326 32.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.6e-34 149.1 101 73.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.6e-33 146.0 99 74.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.6e-33 146.0 99 74.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.6e-32 143.3 99 73.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 4.7e-32 142.9 98 73.5
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.3e-31 140.6 103 69.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 7.5e-30 135.6 104 65.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-28 131.7 103 65.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.2e-19 101.7 64 76.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.1e-19 100.9 67 79.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.6e-16 91.3 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.2e-16 89.4 61 77.0
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 6.2e-08 62.8 35 80.0
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 6.9e-07 59.3 35 77.1


User provided reference genes

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