Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0007131 Helianthus annuus HOM05D002274 ORTHO05D002460 1.7e-34 148.7 68 100.0
Sc13g0009800 Simmondsia chinensis HOM05D002274 ORTHO05D002460 5.7e-11 70.5 52 61.5
SGA_v2.0_scaffold44G16796 Striga asiatica HOM05D002274 ORTHO05D002460 7.5e-11 70.1 39 76.9
Migut.F00222 Erythranthe guttata HOM05D002274 ORTHO05D002460 4.8e-10 67.4 39 71.8
MD01G1220500 Malus domestica HOM05D002274 ORTHO05D002460 4.8e-10 67.4 39 66.7
Ah.07g205780 Amaranthus hybridus HOM05D002274 ORTHO05D002460 1.4e-09 65.9 52 53.8
HanXRQChr09g0267241 Helianthus annuus HOM05D002274 ORTHO05D002460 1.4e-09 65.9 39 74.4
Cc02_g01640 Coffea canephora HOM05D002274 ORTHO05D002460 1.8e-09 65.5 39 71.8
Migut.F01035 Erythranthe guttata HOM05D002274 ORTHO05D002460 1.8e-09 65.5 39 69.2
VMungo1309G1312 Vigna mungo HOM05D002274 ORTHO05D002460 2.4e-09 65.1 57 49.1
Lsat_1_v5_gn_9_56360 Lactuca sativa HOM05D002274 ORTHO05D002460 3.1e-09 64.7 39 69.2
Actinidia34214 Actinidia chinensis HOM05D002274 ORTHO05D002460 4.1e-09 64.3 39 66.7
Phvul.009G053200 Phaseolus vulgaris HOM05D002274 ORTHO05D002460 4.1e-09 64.3 52 53.8
SalBow2G3115 Salvia bowleyana HOM05D002274 ORTHO05D002460 4.1e-09 64.3 39 66.7
SalBow7G0807 Salvia bowleyana HOM05D002274 ORTHO05D002460 4.1e-09 64.3 39 66.7
DCAR_014545 Daucus carota HOM05D002274 ORTHO05D002460 5.4e-09 63.9 39 66.7
Lj3A906G58 Lonicera japonica HOM05D002274 ORTHO05D002460 7.0e-09 63.5 39 69.2
Nitab4.5_0000015g0370 Nicotiana tabacum HOM05D002274 ORTHO05D002460 7.0e-09 63.5 39 69.2
Nitab4.5_0001520g0050 Nicotiana tabacum HOM05D002274 ORTHO05D002460 7.0e-09 63.5 39 69.2
Actinidia08642 Actinidia chinensis HOM05D002274 ORTHO05D002460 9.1e-09 63.2 39 64.1
Sed0016264 Sechium edule HOM05D002274 ORTHO05D002460 9.1e-09 63.2 39 66.7
Oeu046104.1 Olea europaea HOM05D002274 ORTHO05D002460 1.2e-08 62.8 39 66.7
Rhsim03G0208100 Rhododendron simsii HOM05D002274 ORTHO05D002460 1.2e-08 62.8 39 66.7
MSTRG.8519 Avicennia marina HOM05D002274 ORTHO05D002460 1.6e-08 62.4 39 64.1
EL10Ac3g05296 Beta vulgaris HOM05D002274 ORTHO05D002460 1.6e-08 62.4 39 66.7
arahy.Tifrunner.gnm1.ann1.858FVG Arachis hypogaea HOM05D002274 ORTHO05D002460 2.0e-08 62.0 52 53.8
arahy.Tifrunner.gnm1.ann1.REMA0B Arachis hypogaea HOM05D002274 ORTHO05D002460 2.0e-08 62.0 52 53.8
AUR62006103 Chenopodium quinoa HOM05D002274 ORTHO05D002460 2.0e-08 62.0 52 53.8
Medtr1g008200 Medicago truncatula HOM05D002274 ORTHO05D002460 2.0e-08 62.0 52 50.0
Oeu022749.1 Olea europaea HOM05D002274 ORTHO05D002460 2.0e-08 62.0 39 66.7
Sed0026048 Sechium edule HOM05D002274 ORTHO05D002460 2.0e-08 62.0 39 64.1
vmacro06537 Vaccinium macrocarpon HOM05D002274 ORTHO05D002460 2.0e-08 62.0 39 64.1
GSVIVG01038706001 Vitis vinifera HOM05D002274 ORTHO05D002460 2.0e-08 62.0 39 64.1
AUR62019389 Chenopodium quinoa HOM05D002274 ORTHO05D002460 2.7e-08 61.6 52 53.8
Dinv29290 Davidia involucrata HOM05D002274 ORTHO05D002460 2.7e-08 61.6 39 66.7
MD07G1289500 Malus domestica HOM05D002274 ORTHO05D002460 2.7e-08 61.6 39 66.7
unitig_92.g28254 Utricularia gibba HOM05D002274 ORTHO05D002460 2.7e-08 61.6 39 66.7
MSTRG.8662 Avicennia marina HOM05D002274 ORTHO05D002460 3.5e-08 61.2 39 64.1
CDE08G0597 Ceratophyllum demersum HOM05D002274 ORTHO05D002460 3.5e-08 61.2 39 66.7
Glyma.04G236300 Glycine max HOM05D002274 ORTHO05D002460 3.5e-08 61.2 52 53.8
PSO063G0851 Papaver somniferum HOM05D002274 ORTHO05D002460 3.5e-08 61.2 39 64.1
TPR.G12008 Trifolium pratense HOM05D002274 ORTHO05D002460 3.5e-08 61.2 52 51.9
MSTRG.53 Avicennia marina HOM05D002274 ORTHO05D002460 4.5e-08 60.8 38 65.8
CDE02G3736 Ceratophyllum demersum HOM05D002274 ORTHO05D002460 4.5e-08 60.8 37 70.3
COL.COLO4_11270 Corchorus olitorius HOM05D002274 ORTHO05D002460 4.5e-08 60.8 52 50.0
Prupe.2G310800 Prunus persica HOM05D002274 ORTHO05D002460 4.5e-08 60.8 39 64.1
SalBow4G2656 Salvia bowleyana HOM05D002274 ORTHO05D002460 4.5e-08 60.8 39 64.1
Solyc03g083390.4 Solanum lycopersicum HOM05D002274 ORTHO05D002460 4.5e-08 60.8 39 66.7
CAN.G589.3 Capsicum annuum HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 66.7
Gohir.A09G184400 Gossypium hirsutum HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
Gohir.D09G179200 Gossypium hirsutum HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
Gorai.006G201200 Gossypium raimondii HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
Nitab4.5_0001717g0010 Nicotiana tabacum HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
Oeu030286.1 Olea europaea HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
Psat6g004520 Pisum sativum HOM05D002274 ORTHO05D002460 5.9e-08 60.5 52 50.0
Potri.015G013900 Populus trichocarpa HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 64.1
SGA_v2.0_scaffold192G40556 Striga asiatica HOM05D000400 ORTHO05D000575 5.9e-08 60.5 39 66.7
TPR.G12100 Trifolium pratense HOM05D002274 ORTHO05D002460 5.9e-08 60.5 52 50.0
HPP92_016906 Vanilla planifolia HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 61.5
VMungo0647G2402 Vigna mungo HOM05D002274 ORTHO05D002460 5.9e-08 60.5 39 61.5
CSS0011717 Camellia sinensis var. sinensis HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
CSS0019974 Camellia sinensis var. sinensis HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
ClCG01G000450 Citrullus lanatus HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
MELO3C005884.2 Cucumis melo HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
CsaV3_5G000520 Cucumis sativus L. HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
Dinv35327 Davidia involucrata HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 64.1
Nitab4.5_0004130g0020 Nicotiana tabacum HOM05D002274 ORTHO05D002460 7.7e-08 60.1 39 66.7
ATR0584G067 Amborella trichopoda HOM05D002274 ORTHO05D002460 1.0e-07 59.7 39 61.5
Ca_12807_v3 Cicer arietinum L. HOM05D002274 ORTHO05D002460 1.0e-07 59.7 39 59.0
Hma1.2p1_0404F.1_g145460 Hydrangea macrophylla HOM05D002274 ORTHO05D002460 1.0e-07 59.7 39 61.5
Medtr1g008170 Medicago truncatula HOM05D002274 ORTHO05D002460 1.0e-07 59.7 52 50.0
PSO170G6345 Papaver somniferum HOM05D002274 ORTHO05D002460 1.0e-07 59.7 39 61.5
Sopen03g023160 Solanum pennellii HOM05D002274 ORTHO05D002460 1.0e-07 59.7 39 61.5
vmacro20739 Vaccinium macrocarpon HOM05D002511 ORTHO05D000106 1.0e-07 59.7 39 61.5
Aqoxy5G04244 Aquilegia oxysepala HOM05D002274 ORTHO05D002460 1.3e-07 59.3 39 64.1
Lj1g0028241 Lotus japonicus HOM05D002274 ORTHO05D002460 1.3e-07 59.3 39 61.5
PGSC0003DMG400009123 Solanum tuberosum HOM05D002274 ORTHO05D002460 1.3e-07 59.3 39 64.1
THA.LOC104799978 Tarenaya hassleriana HOM05D002274 ORTHO05D002460 1.3e-07 59.3 39 64.1
Thecc.03G197600 Theobroma cacao HOM05D002274 ORTHO05D002460 1.3e-07 59.3 39 61.5
CiPaw.05G251200 Carya illinoinensis HOM05D002274 ORTHO05D002460 1.7e-07 58.9 39 61.5
Glyma.06G128000 Glycine max HOM05D002274 ORTHO05D002460 1.7e-07 58.9 39 64.1
Lj1C1016T2 Lonicera japonica HOM05D002274 ORTHO05D002460 1.7e-07 58.9 39 64.1
vmacro00996 Vaccinium macrocarpon HOM05D002274 ORTHO05D002460 1.7e-07 58.9 39 61.5
Ciclev10021271m.g Citrus clementina HOM05D002274 ORTHO05D002460 2.3e-07 58.5 37 64.9
Lalb_Chr08g0240281 Lupinus albus HOM05D002274 ORTHO05D002460 2.3e-07 58.5 52 51.9
Cc03_g08340 Coffea canephora HOM05D002274 ORTHO05D002460 2.9e-07 58.2 39 56.4
Lj8P624T48 Lonicera japonica HOM05D002274 ORTHO05D002460 2.9e-07 58.2 38 65.8
MBI07_g46535_MAGBIO Magnolia biondii HOM05D002274 ORTHO05D002460 2.9e-07 58.2 39 61.5
Manes.06G160000 Manihot esculenta HOM05D002274 ORTHO05D002460 2.9e-07 58.2 39 59.0
Manes.06G160400 Manihot esculenta HOM05D002274 ORTHO05D002460 2.9e-07 58.2 39 59.0
Oeu059297.1 Olea europaea HOM05D002274 ORTHO05D002460 2.9e-07 58.2 39 59.0
ECA232G0598 Erigeron canadensis HOM05D002274 ORTHO05D002460 3.8e-07 57.8 39 64.1
MBI06_g08476_MAGBIO Magnolia biondii HOM05D002274 ORTHO05D002460 3.8e-07 57.8 39 61.5
TWI14G0026 Tripterygium wilfordii HOM05D002274 ORTHO05D002460 3.8e-07 57.8 38 60.5
AUR62042728 Chenopodium quinoa HOM05D002274 ORTHO05D002460 5.0e-07 57.4 52 50.0
Manes.14G006200 Manihot esculenta HOM05D002274 ORTHO05D002460 5.0e-07 57.4 39 56.4
Medtr1g008195 Medicago truncatula HOM05D002274 ORTHO05D002460 5.0e-07 57.4 39 59.0
Os06g0231300 Oryza sativa ssp. japonica HOM05D002274 ORTHO05D002460 5.0e-07 57.4 39 56.4
Potri.012G014100 Populus trichocarpa HOM05D002274 ORTHO05D002460 5.0e-07 57.4 39 56.4
Actinidia03165 Actinidia chinensis HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 64.1
Cfa016219 Carpinus fangiana HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 56.4
Lalb_Chr11g0066831 Lupinus albus HOM05D002274 ORTHO05D002460 6.6e-07 57.0 52 48.1
Peaxi162Scf00550g00549 Petunia axillaris HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 64.1
Peaxi162Scf00618g00415 Petunia axillaris HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 59.0
PGR042G3455 Punica granatum HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 56.4
TWI39G0853 Tripterygium wilfordii HOM05D002274 ORTHO05D002460 6.6e-07 57.0 39 56.4
Cpa.g.sc3.79 Carica papaya HOM05D002274 ORTHO05D002460 8.6e-07 56.6 39 53.8
Duzib205G1597 Durio zibethinus HOM05D002274 ORTHO05D002460 8.6e-07 56.6 38 60.5
Gohir.A12G250300 Gossypium hirsutum HOM05D002274 ORTHO05D002460 8.6e-07 56.6 39 59.0
Gohir.D12G251100 Gossypium hirsutum HOM05D002274 ORTHO05D002460 8.6e-07 56.6 39 59.0
Gorai.008G269200 Gossypium raimondii HOM05D002274 ORTHO05D002460 8.6e-07 56.6 39 59.0
CAN.G968.15 Capsicum annuum HOM05D002274 ORTHO05D002460 1.1e-06 56.2 39 59.0
Eucgr.A01460 Eucalyptus grandis HOM05D002274 ORTHO05D002460 1.1e-06 56.2 39 56.4
TAR629G1311 Trochodendron aralioides HOM05D002274 ORTHO05D002460 1.1e-06 56.2 39 56.4
Haze_00223 Corylus avellana HOM05D002274 ORTHO05D002460 1.5e-06 55.8 39 53.8
CANSAT21G2592 Cannabis sativa HOM05D002274 ORTHO05D002460 1.9e-06 55.5 39 59.0
CARHR266530 Cardamine hirsuta HOM05D002274 ORTHO05D002460 1.9e-06 55.5 52 48.1
Mapoly0030s0062 Marchantia polymorpha HOM05D002274 ORTHO05D002460 2.5e-06 55.1 39 56.4
Rhsim12G0007900 Rhododendron simsii HOM05D002274 ORTHO05D002460 2.5e-06 55.1 39 56.4
Zm00001eb279760 Zea mays HOM05D002274 ORTHO05D002460 2.5e-06 55.1 39 56.4
CiPaw.06G010400 Carya illinoinensis HOM05D002274 ORTHO05D002460 3.3e-06 54.7 39 53.8
Duzib068G0874 Durio zibethinus HOM05D002274 ORTHO05D002460 3.3e-06 54.7 39 56.4
Sabra12G0017700 Salix brachista HOM05D002274 ORTHO05D002460 3.3e-06 54.7 39 51.3
DCAR_020317 Daucus carota HOM05D002274 ORTHO05D002460 4.2e-06 54.3 39 61.5
QL09p009417 Quercus lobata HOM05D002274 ORTHO05D002460 4.2e-06 54.3 39 53.8
DCAR_008918 Daucus carota HOM05D002274 ORTHO05D002460 5.5e-06 53.9 39 61.5
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.2e-06 53.5 39 53.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.2e-06 53.5 39 53.8
TAR636G3064 Trochodendron aralioides HOM05D002274 ORTHO05D002460 7.2e-06 53.5 39 56.4
Haze_08077 Corylus avellana HOM05D002274 ORTHO05D002460 9.5e-06 53.1 39 48.7
Nn3g18999 Nelumbo nucifera HOM05D002274 ORTHO05D002460 9.5e-06 53.1 39 59.0
PSO063G4578 Papaver somniferum HOM05D002274 ORTHO05D002460 9.5e-06 53.1 38 57.9
PSO063G5049 Papaver somniferum HOM05D002274 ORTHO05D002460 9.5e-06 53.1 38 57.9


User provided reference genes

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