Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.4e-96 356.3 177 100.0
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 6.1e-81 304.3 166 92.2
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 8.9e-80 300.4 166 91.0
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.6e-79 298.9 166 90.4
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 3.7e-78 295.0 166 89.2
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 3.7e-78 295.0 166 89.2
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 6.3e-78 294.3 166 89.2
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 8.3e-78 293.9 166 88.6
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 8.3e-78 293.9 166 87.3
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 88.0
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 88.0
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 88.0
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 88.0
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 87.3
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.1e-77 293.5 166 88.0
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 1.4e-77 293.1 166 88.6
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.4e-77 293.1 166 87.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.4e-77 293.1 166 88.0
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 2.4e-77 292.4 166 88.0
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.2e-77 292.0 166 88.0
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 86.7
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 87.3
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 4.1e-77 291.6 171 84.8
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 4.1e-77 291.6 171 84.2
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 86.7
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 86.7
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 86.7
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 86.7
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 88.0
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.1e-77 291.6 166 87.3
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 87.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 87.3
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 87.3
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 5.4e-77 291.2 166 86.7
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 7.0e-77 290.8 166 86.7
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 7.0e-77 290.8 166 87.3
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 9.2e-77 290.4 166 87.3
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 9.2e-77 290.4 166 86.7
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 9.2e-77 290.4 166 86.7
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 9.2e-77 290.4 167 86.2
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-76 290.0 175 82.3
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.2e-76 290.0 166 86.7
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.2e-76 290.0 166 86.7
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.2e-76 290.0 166 86.7
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.6e-76 289.7 166 86.7
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.6e-76 289.7 166 86.7
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.7
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.1
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.7
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.1
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.1
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.1
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.0e-76 289.3 166 86.7
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.0e-76 289.3 176 82.4
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 2.7e-76 288.9 166 86.1
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 2.7e-76 288.9 166 86.1
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.7e-76 288.9 166 86.1
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.7e-76 288.9 166 86.1
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.7e-76 288.9 166 86.1
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 3.5e-76 288.5 166 86.7
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.5e-76 288.5 167 85.6
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 3.5e-76 288.5 166 86.7
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 3.5e-76 288.5 166 86.1
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 4.5e-76 288.1 166 85.5
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 4.5e-76 288.1 166 86.7
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.9e-76 287.7 166 86.1
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 5.9e-76 287.7 165 86.1
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 85.5
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 85.5
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 85.5
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 85.5
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 85.5
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 86.7
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 7.8e-76 287.3 166 86.1
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.0e-75 287.0 166 84.9
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.0e-75 287.0 167 85.6
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.0e-75 287.0 166 84.9
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.0e-75 287.0 166 84.9
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.0e-75 287.0 166 84.9
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.3e-75 286.6 165 85.5
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.3e-75 286.6 165 85.5
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.3e-75 286.6 166 85.5
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.3e-75 286.6 166 85.5
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.3e-75 286.6 174 81.6
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.7e-75 286.2 166 84.9
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.7e-75 286.2 166 84.9
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.7e-75 286.2 166 84.9
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.7e-75 286.2 166 84.9
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 2.3e-75 285.8 166 86.7
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 2.3e-75 285.8 165 85.5
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 2.3e-75 285.8 165 85.5
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 2.3e-75 285.8 165 85.5
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 6.6e-75 284.3 166 84.9
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 8.6e-75 283.9 166 84.3
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.9e-74 282.7 166 84.9
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.9e-74 282.7 166 84.3
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.5e-74 282.3 166 83.7
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.3e-74 281.6 166 83.7
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.2e-73 280.0 166 83.7
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.2e-73 280.0 166 83.1
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 2.8e-73 278.9 198 71.7
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.3e-72 275.8 175 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 1.2e-71 273.5 166 81.3
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 2.0e-71 272.7 155 86.5
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 7.5e-71 270.8 166 81.3
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 4.9e-70 268.1 152 86.2
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.4e-69 266.5 191 72.8
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 3.2e-69 265.4 166 77.7
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 6.6e-67 257.7 166 74.1
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.6e-67 257.3 197 69.0
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.9e-66 256.1 146 87.0
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 8.3e-62 240.7 138 85.5
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 3.5e-60 235.3 166 74.1
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.7e-59 233.0 166 74.1
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-59 231.5 166 72.9
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-59 231.5 166 72.9
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-59 231.5 166 72.9
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 6.6e-59 231.1 166 72.9
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.3e-58 228.8 166 72.3
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 7.3e-58 227.6 166 72.3
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.8e-56 221.1 189 62.4
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.2e-55 220.3 130 86.2
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.5e-55 219.9 166 69.3
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 7.6e-55 217.6 142 75.4
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.7e-52 209.1 125 80.8
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.7e-49 198.4 110 87.3
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 4.7e-49 198.4 149 70.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 3.1e-48 195.7 166 59.6
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 5.1e-43 178.3 104 86.5
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.8e-38 162.2 84 92.9
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 3.8e-38 162.2 166 51.8
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 4.9e-38 161.8 87 87.4
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.4e-38 161.0 134 63.4
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 1.1e-37 160.6 135 63.7
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.1e-34 150.6 163 49.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.6e-34 147.5 74 93.2
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.6e-34 147.5 74 93.2
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.2e-29 132.5 70 90.0
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 3.2e-21 105.9 58 82.8
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 5.3e-16 88.6 113 46.0
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.8e-14 82.4 53 83.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.4e-13 80.5 103 47.6
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.9e-13 80.1 41 90.2
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.2e-13 79.3 53 79.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 3.5e-12 75.9 94 48.9
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 5.1e-11 72.0 39 89.7
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 5.7e-10 68.6 56 58.9
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.4e-10 68.2 47 70.2
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 6.3e-09 65.1 36 86.1
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 5.3e-08 62.0 48 66.7
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 1.7e-06 57.0 39 71.8


User provided reference genes

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