Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 4.9e-64 247.7 128 100.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 2.2e-43 179.1 125 69.6
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.6e-41 172.2 125 66.4
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 3.4e-41 171.8 125 68.0
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 5.9e-41 171.0 118 73.7
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.0e-40 170.2 125 68.8
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.3e-40 169.9 115 70.4
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.7e-40 169.5 121 70.2
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.7e-40 169.5 118 71.2
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.2e-40 169.1 115 70.4
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.2e-40 169.1 115 70.4
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.2e-40 169.1 115 70.4
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.2e-40 169.1 116 69.0
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 2.2e-40 169.1 115 69.6
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 3.8e-40 168.3 115 72.2
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 6.5e-40 167.5 118 71.2
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 8.5e-40 167.2 117 66.7
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.1e-39 166.8 125 65.6
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 3.2e-39 165.2 115 70.4
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 4.2e-39 164.9 118 72.0
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 7.2e-39 164.1 116 66.4
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 9.4e-39 163.7 118 71.2
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 1.6e-38 162.9 115 67.8
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 3.6e-38 161.8 115 68.7
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 4.6e-38 161.4 115 67.8
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 6.1e-38 161.0 118 66.1
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 7.9e-38 160.6 115 67.8
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 7.9e-38 160.6 121 64.5
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.9e-38 160.6 118 72.0
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 1.0e-37 160.2 115 68.7
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.4e-37 159.8 115 67.0
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.8e-37 159.5 114 67.5
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.8e-37 159.5 116 64.7
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 2.3e-37 159.1 116 66.4
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 2.3e-37 159.1 120 65.8
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 3.0e-37 158.7 126 64.3
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 3.0e-37 158.7 115 67.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 3.9e-37 158.3 122 61.5
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 5.1e-37 157.9 113 69.9
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 5.1e-37 157.9 115 67.8
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.7e-37 157.5 115 66.1
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 6.7e-37 157.5 119 63.9
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 6.7e-37 157.5 116 64.7
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 8.8e-37 157.1 111 73.0
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 8.8e-37 157.1 115 67.8
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 8.8e-37 157.1 115 67.8
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-36 156.8 115 67.0
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.1e-36 156.8 115 66.1
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 1.1e-36 156.8 116 63.8
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.1e-36 156.8 122 60.7
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.1e-36 156.8 125 60.8
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.5e-36 156.4 122 62.3
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.0e-36 156.0 113 69.0
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 2.0e-36 156.0 116 66.4
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 2.0e-36 156.0 111 68.5
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 2.0e-36 156.0 116 68.1
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 2.5e-36 155.6 115 67.0
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 3.3e-36 155.2 122 61.5
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 3.3e-36 155.2 115 64.3
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 4.3e-36 154.8 122 59.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 5.7e-36 154.5 115 63.5
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 7.4e-36 154.1 115 65.2
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.4e-36 154.1 115 64.3
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 7.4e-36 154.1 121 62.0
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 9.7e-36 153.7 116 66.4
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 9.7e-36 153.7 116 66.4
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.7e-35 152.9 115 65.2
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.7e-35 152.9 115 67.0
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.7e-35 152.9 115 64.3
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.7e-35 152.9 115 64.3
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.7e-35 152.9 116 66.4
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.7e-35 152.9 113 66.4
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 2.2e-35 152.5 115 65.2
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 3.7e-35 151.8 114 64.9
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 3.7e-35 151.8 116 66.4
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 3.7e-35 151.8 115 66.1
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 4.8e-35 151.4 119 62.2
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 4.8e-35 151.4 115 66.1
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 6.3e-35 151.0 120 61.7
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 6.3e-35 151.0 120 61.7
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 8.2e-35 150.6 120 61.7
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 8.2e-35 150.6 113 67.3
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 8.2e-35 150.6 122 63.1
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 1.1e-34 150.2 115 63.5
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.1e-34 150.2 113 69.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.4e-34 149.8 118 61.9
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 1.4e-34 149.8 120 61.7
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 2.4e-34 149.1 120 60.8
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 2.4e-34 149.1 99 73.7
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 2.4e-34 149.1 115 60.0
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.1e-34 148.7 113 63.7
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 3.1e-34 148.7 113 61.9
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 3.1e-34 148.7 115 62.6
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 4.1e-34 148.3 119 62.2
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 4.1e-34 148.3 118 62.7
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 4.1e-34 148.3 116 62.9
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.1e-34 148.3 119 61.3
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 5.3e-34 147.9 105 71.4
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 5.3e-34 147.9 115 60.9
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 5.3e-34 147.9 113 61.1
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.3e-34 147.9 115 64.3
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 5.3e-34 147.9 115 62.6
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 9.1e-34 147.1 116 60.3
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 9.1e-34 147.1 119 61.3
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-33 146.7 115 62.6
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-33 146.7 115 62.6
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 1.5e-33 146.4 116 63.8
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 2.0e-33 146.0 116 62.1
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.6e-33 145.6 102 70.6
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.6e-33 145.6 115 61.7
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 3.4e-33 145.2 113 61.9
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 3.4e-33 145.2 119 59.7
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 3.4e-33 145.2 119 59.7
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 3.4e-33 145.2 107 66.4
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 3.4e-33 145.2 107 66.4
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 4.5e-33 144.8 119 60.5
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 5.9e-33 144.4 107 67.3
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.0e-32 143.7 107 66.4
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 1.0e-32 143.7 117 58.1
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-32 143.3 106 67.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.3e-32 143.3 107 68.2
COL.COLO4_09217 Corchorus olitorius HOM05D003293 ORTHO05D022256 1.3e-32 143.3 104 69.2
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.3e-32 143.3 115 60.9
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.3e-32 143.3 116 58.6
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 1.3e-32 143.3 115 64.3
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.7e-32 142.9 107 65.4
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.7e-32 142.9 107 65.4
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.7e-32 142.9 107 65.4
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.7e-32 142.9 107 66.4
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.7e-32 142.9 107 66.4
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.4e-31 139.8 107 65.4
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.9e-31 139.4 107 63.6
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 1.9e-31 139.4 115 59.1
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 3.2e-31 138.7 115 60.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 7.2e-31 137.5 113 59.3
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.2e-30 136.7 115 59.1
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 2.1e-30 136.0 116 56.0
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.7e-30 135.6 113 59.3
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 7.9e-30 134.0 108 58.3
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.0e-29 132.1 113 59.3
Nitab4.5_0003468g0040 Nicotiana tabacum HOM05D003293 ORTHO05D022256 9.7e-28 127.1 94 66.0
VMungo1383G2096 Vigna mungo HOM05D003293 ORTHO05D022256 2.2e-27 125.9 99 64.6
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 5.9e-25 117.9 113 54.9
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 5.0e-24 114.8 82 68.3
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 8.5e-24 114.0 103 52.4
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 4.2e-23 111.7 116 48.3
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 9.4e-23 110.5 112 51.8
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 4.7e-22 108.2 107 52.3
VMungo1383G0635 Vigna mungo HOM05D003293 ORTHO05D022256 6.7e-21 104.4 73 69.9
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 1.8e-18 96.3 112 43.8
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.0e-16 90.5 83 56.6
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 5.0e-16 88.2 104 44.2
Cfa010353 Carpinus fangiana HOM05D003293 ORTHO05D022256 1.2e-14 83.6 65 58.5
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 3.6e-14 82.0 83 50.6
Cfa018910 Carpinus fangiana HOM05D000001 ORTHO05D009995 1.4e-13 80.1 95 47.4
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.2e-12 77.0 60 65.0
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 1.5e-12 76.6 56 64.3
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.7e-11 73.2 60 60.0
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.2e-11 72.8 60 61.7
Ca_28902_v3 Cicer arietinum L. HOM05D003293 ORTHO05D149213 1.8e-10 69.7 90 38.9
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 5.4e-10 68.2 81 48.1
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 5.9e-09 64.7 58 53.4
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 5.9e-09 64.7 58 53.4
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 5.9e-09 64.7 58 53.4
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-08 62.0 58 51.7
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 6.5e-08 61.2 58 51.7
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 2.5e-07 59.3 58 51.7
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 3.2e-07 58.9 58 50.0
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 6.1e-06 54.7 52 53.8


User provided reference genes

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