Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.6e-77 292.0 147 100.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.5e-35 152.5 75 97.3
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-29 133.3 94 70.2
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-29 133.3 94 70.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.0e-17 92.4 100 51.0
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.8e-16 87.4 117 48.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-15 87.0 85 57.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.2e-15 86.3 94 55.3
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.3e-15 84.7 115 45.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 6.3e-15 84.7 95 54.7
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.8e-14 83.2 84 52.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.4e-14 82.8 102 52.9
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.4e-14 82.8 94 53.2
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-14 82.4 115 45.2
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.1e-14 82.0 115 47.8
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 5.4e-14 81.6 117 46.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.4e-14 81.6 94 52.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.0e-14 81.3 114 45.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 7.0e-14 81.3 119 46.2
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.2e-13 80.5 108 46.3
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.6e-13 80.1 93 51.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.6e-13 80.1 120 47.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.7e-13 79.3 118 45.8
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.7e-13 79.3 115 47.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.5e-13 79.0 116 42.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 4.5e-13 78.6 86 54.7
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.5e-13 78.6 114 46.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.5e-13 78.6 122 43.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 4.5e-13 78.6 115 40.9
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.0e-12 77.4 117 44.4
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.3e-12 77.0 116 43.1
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.7e-12 76.6 118 44.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.9e-12 75.9 122 46.7
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-12 75.9 99 49.5
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.9e-12 75.9 124 41.9
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.8e-12 75.5 115 40.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.0e-12 75.1 121 47.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 8.6e-12 74.3 125 44.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.5e-11 73.6 119 43.7
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.5e-11 73.6 78 51.3
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.9e-11 73.2 114 41.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.9e-11 73.2 83 50.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.9e-11 73.2 113 39.8
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.3e-11 72.4 124 43.5
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.3e-11 72.4 122 42.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.3e-11 72.0 89 47.2
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.3e-11 72.0 121 43.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.3e-11 72.0 117 37.6
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.3e-11 72.0 74 52.7
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 5.6e-11 71.6 79 46.8
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 5.6e-11 71.6 78 46.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 7.3e-11 71.2 121 42.1
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.3e-11 71.2 117 41.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.5e-11 70.9 121 42.1
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.5e-11 70.9 61 55.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-10 70.5 70 52.9
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.2e-10 70.5 120 42.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.2e-10 70.5 127 40.9
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.6e-10 70.1 93 49.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.6e-10 70.1 108 41.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-10 70.1 127 40.9
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.6e-10 70.1 108 38.9
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.1e-10 69.7 72 51.4
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.1e-10 69.7 117 41.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.1e-10 69.7 63 55.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.8e-10 69.3 102 42.2
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.8e-10 69.3 119 42.9
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.6e-10 68.9 86 46.5
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.6e-10 68.9 94 44.7
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-10 68.9 94 44.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.6e-10 68.9 94 44.7
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.6e-10 68.9 102 45.1
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.6e-10 68.9 114 40.4
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.6e-10 68.9 117 42.7
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-10 68.6 124 45.2
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-10 68.6 124 45.2
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-10 68.6 124 45.2
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-10 68.6 124 45.2
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 4.7e-10 68.6 79 50.6
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.7e-10 68.6 84 45.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.1e-10 68.2 94 43.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.1e-10 68.2 94 43.6
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 6.1e-10 68.2 102 43.1
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.1e-10 68.2 120 41.7
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 6.1e-10 68.2 72 52.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.1e-10 68.2 117 37.6
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 8.0e-10 67.8 110 43.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 8.0e-10 67.8 100 45.0
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 8.0e-10 67.8 74 45.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 8.0e-10 67.8 55 56.4
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 8.0e-10 67.8 114 40.4
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.0e-09 67.4 104 40.4
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.0e-09 67.4 83 44.6
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-09 67.0 118 44.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.4e-09 67.0 79 48.1
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.8e-09 66.6 119 42.0
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-09 66.6 109 38.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.3e-09 66.2 117 36.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.3e-09 66.2 119 41.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.1e-09 65.9 78 50.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.1e-09 65.9 100 43.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.1e-09 65.9 116 38.8
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.0e-09 65.5 56 57.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.0e-09 65.5 125 38.4
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.2e-09 65.1 67 49.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 5.2e-09 65.1 122 41.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 6.8e-09 64.7 67 46.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.9e-09 64.3 117 36.8
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 8.9e-09 64.3 101 33.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 8.9e-09 64.3 76 42.1
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 8.9e-09 64.3 116 37.9
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 8.9e-09 64.3 93 43.0
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.5e-08 63.5 90 40.0
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-08 63.5 134 40.3
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-08 63.5 134 40.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-08 63.5 66 51.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-08 63.2 86 47.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.6e-08 62.8 64 45.3
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.6e-08 62.8 80 46.2
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.6e-08 62.8 85 45.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-08 62.4 117 40.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.4e-08 62.4 117 40.2
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.4e-08 62.4 103 37.9
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.4e-08 62.4 116 34.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 4.4e-08 62.0 115 37.4
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 4.4e-08 62.0 122 40.2
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.4e-08 62.0 70 44.3
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.4e-08 62.0 85 44.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.8e-08 61.6 93 46.2
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 7.5e-08 61.2 113 34.5
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 7.5e-08 61.2 115 34.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 7.5e-08 61.2 115 36.5
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.5e-08 61.2 115 33.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.8e-08 60.8 83 42.2
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 9.8e-08 60.8 85 43.5
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.3e-07 60.5 79 43.0
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.3e-07 60.5 59 52.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-07 60.5 70 42.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.7e-07 60.1 117 35.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.2e-07 59.7 86 39.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 2.9e-07 59.3 107 36.4
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.7e-07 58.9 114 32.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 4.9e-07 58.5 77 39.0
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.9e-07 58.5 115 33.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.9e-07 58.5 107 39.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.9e-07 58.5 47 63.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 4.9e-07 58.5 47 63.8
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 4.9e-07 58.5 106 35.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.4e-07 58.2 98 43.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 6.4e-07 58.2 101 34.7
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.4e-07 58.2 52 53.8
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.4e-07 58.2 52 53.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 8.3e-07 57.8 68 51.5
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 8.3e-07 57.8 67 44.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-06 57.4 113 33.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.9e-06 56.6 72 38.9
HPP92_028110 Vanilla planifolia HOM05D003592 ORTHO05D429145 1.9e-06 56.6 61 45.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.4e-06 56.2 93 43.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-06 56.2 77 45.5
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.2e-06 55.8 72 40.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 3.2e-06 55.8 117 34.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 3.2e-06 55.8 117 34.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.2e-06 55.8 70 41.4
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.1e-06 55.5 79 39.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 5.4e-06 55.1 91 38.5
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 5.4e-06 55.1 115 33.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 5.4e-06 55.1 74 39.2
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 5.4e-06 55.1 145 35.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 7.0e-06 54.7 115 33.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 7.0e-06 54.7 77 45.5


User provided reference genes

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