Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 9.9e-72 273.5 151 100.0
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 5.3e-17 91.7 127 55.1
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 9.1e-17 90.9 143 50.3
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.3e-15 87.0 152 45.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.3e-15 87.0 152 45.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.7e-15 86.7 157 47.8
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.8e-15 85.5 151 43.7
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 5.0e-15 85.1 84 66.7
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 6.5e-15 84.7 92 63.0
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 6.5e-15 84.7 92 63.0
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 6.5e-15 84.7 92 63.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 6.5e-15 84.7 92 63.0
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.5e-15 84.7 82 68.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-14 84.0 151 43.0
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-14 84.0 151 43.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.1e-14 84.0 109 58.7
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.5e-14 82.8 154 48.1
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.2e-14 82.4 92 67.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.2e-14 82.0 137 51.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 5.5e-14 81.6 108 61.1
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-13 80.5 109 57.8
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.6e-13 80.1 100 64.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.7e-13 79.3 91 65.9
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-13 79.3 109 57.8
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.6e-13 79.0 100 59.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 3.6e-13 79.0 121 53.7
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.1e-13 78.2 112 47.3
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.0e-13 77.8 96 62.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.0e-12 77.4 112 55.4
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.4e-12 77.0 87 66.7
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.4e-12 77.0 87 66.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.4e-12 77.0 123 53.7
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.8e-12 76.6 87 65.5
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.8e-12 76.6 95 64.2
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.0e-12 75.9 83 66.3
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.0e-12 75.9 91 63.7
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.0e-12 75.9 134 49.3
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.0e-12 75.5 91 62.6
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.0e-12 75.5 91 62.6
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 4.0e-12 75.5 146 45.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 4.0e-12 75.5 60 66.7
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 5.2e-12 75.1 113 53.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.2e-12 75.1 85 64.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.2e-12 75.1 148 44.6
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.7e-12 74.7 96 59.4
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.8e-12 74.3 81 67.9
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 8.8e-12 74.3 98 60.2
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 8.8e-12 74.3 106 56.6
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 8.8e-12 74.3 111 59.5
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.2e-11 73.9 94 63.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.2e-11 73.9 85 63.5
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.5e-11 73.6 112 56.2
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.0e-11 73.2 98 58.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.0e-11 73.2 88 65.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.0e-11 73.2 130 51.5
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.0e-11 73.2 87 63.2
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.0e-11 73.2 124 51.6
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.6e-11 72.8 152 46.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.6e-11 72.8 111 55.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.6e-11 72.8 122 49.2
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.6e-11 72.8 88 65.9
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.3e-11 72.4 87 63.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.3e-11 72.4 87 63.2
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.3e-11 72.4 87 63.2
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.4e-11 72.0 98 59.2
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.4e-11 72.0 111 55.0
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.4e-11 72.0 111 55.0
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.4e-11 72.0 111 55.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 4.4e-11 72.0 88 60.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 4.4e-11 72.0 88 60.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.7e-11 71.6 103 58.3
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 5.7e-11 71.6 96 61.5
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.7e-11 71.6 98 60.2
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.7e-11 71.6 87 64.4
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.5e-11 71.2 111 52.3
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.5e-11 71.2 91 62.6
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.7e-11 70.9 82 63.4
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 9.7e-11 70.9 91 62.6
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.3e-10 70.5 111 54.1
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.3e-10 70.5 119 52.9
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.3e-10 70.5 88 63.6
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.7e-10 70.1 87 62.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.2e-10 69.7 102 52.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.2e-10 69.7 97 58.8
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.2e-10 69.7 114 41.2
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 2.8e-10 69.3 154 43.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.8e-10 69.3 88 63.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.8e-10 69.3 91 58.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 3.7e-10 68.9 162 42.0
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.7e-10 68.9 154 43.5
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.7e-10 68.9 154 42.2
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.7e-10 68.9 104 52.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 4.8e-10 68.6 83 63.9
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 6.3e-10 68.2 152 43.4
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 8.2e-10 67.8 91 61.5
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.2e-10 67.8 98 58.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.1e-09 67.4 91 61.5
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 1.4e-09 67.0 87 60.9
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.4e-09 67.0 91 58.2
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.4e-09 67.0 116 46.6
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.1e-09 65.9 80 63.8
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.1e-09 65.5 93 55.9
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 5.3e-09 65.1 158 44.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 7.0e-09 64.7 91 57.1
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.1e-09 64.3 119 48.7
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 9.1e-09 64.3 121 50.4
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.2e-08 63.9 106 53.8
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.7e-08 62.8 81 64.2
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.7e-08 62.8 64 56.2
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.5e-08 62.0 109 49.5
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.5e-08 62.0 105 50.5
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 4.5e-08 62.0 129 45.0
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.9e-08 61.6 101 52.5
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 7.7e-08 61.2 91 54.9
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.0e-07 60.8 84 57.1
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.0e-07 60.8 84 57.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.3e-07 60.5 88 59.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.9e-07 59.3 78 56.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.8e-07 58.9 103 51.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 5.0e-07 58.5 87 57.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 6.5e-07 58.2 139 39.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-06 57.4 92 54.3
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.9e-06 56.6 135 45.9
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.9e-06 56.6 135 45.2
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.2e-06 55.8 86 55.8
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 4.2e-06 55.5 103 49.5
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.2e-06 55.5 86 55.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 4.2e-06 55.5 86 55.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 4.2e-06 55.5 86 55.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 4.2e-06 55.5 86 55.8
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.2e-06 55.5 99 49.5


User provided reference genes

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