Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 2.4e-101 372.1 175 100.0
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.7e-91 339.3 175 89.1
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 2.9e-91 338.6 175 88.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 5.0e-91 337.8 174 88.5
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 5.0e-91 337.8 173 87.9
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 5.0e-91 337.8 175 88.0
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 5.0e-91 337.8 175 88.6
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 87.4
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 87.4
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 87.4
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 87.4
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 87.4
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.4e-90 336.3 175 88.6
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.9e-90 335.9 175 87.4
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.9e-90 335.9 174 87.9
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.9e-90 335.9 174 87.9
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.9e-90 335.9 175 87.4
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.9e-90 335.9 175 86.9
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 2.5e-90 335.5 175 87.4
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.5e-90 335.5 175 88.0
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.5e-90 335.5 175 87.4
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.2e-90 335.1 175 87.4
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 85.7
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 85.7
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 87.4
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 86.3
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 4.2e-90 334.7 174 86.2
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 86.9
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 4.2e-90 334.7 175 87.4
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 86.3
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 86.3
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 86.9
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 86.3
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 85.1
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 86.3
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 86.3
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 85.7
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 86.3
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 7.1e-90 334.0 175 85.7
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 9.3e-90 333.6 175 85.7
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 9.3e-90 333.6 175 86.9
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 9.3e-90 333.6 175 87.4
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 9.3e-90 333.6 174 86.8
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.7
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 85.1
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 86.9
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 1.2e-89 333.2 172 86.6
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 86.9
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 86.3
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.6e-89 332.8 175 85.1
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 1.6e-89 332.8 175 85.7
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.6e-89 332.8 175 86.3
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.6e-89 332.8 175 85.1
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 2.1e-89 332.4 175 85.1
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 2.1e-89 332.4 173 87.3
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 2.1e-89 332.4 173 87.3
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 2.1e-89 332.4 175 85.1
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-89 332.0 175 85.7
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 2.7e-89 332.0 175 86.3
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 2.7e-89 332.0 175 86.3
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 2.7e-89 332.0 174 84.5
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 2.7e-89 332.0 175 86.9
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.7
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.7
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.1
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.7
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.1
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.7
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 85.1
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.5e-89 331.6 169 89.3
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.6e-89 331.3 175 86.3
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 4.6e-89 331.3 175 84.6
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 4.6e-89 331.3 175 84.6
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.6e-89 331.3 175 86.9
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 4.6e-89 331.3 172 85.5
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 4.6e-89 331.3 172 85.5
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 4.6e-89 331.3 175 85.7
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 6.1e-89 330.9 177 86.4
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 85.7
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 85.7
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 84.6
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 7.9e-89 330.5 172 86.0
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 85.1
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 85.1
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 85.1
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.0e-88 330.1 175 85.1
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 1.3e-88 329.7 175 85.1
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 2.3e-88 328.9 175 85.7
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 3.0e-88 328.6 175 84.0
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 3.0e-88 328.6 175 84.0
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 3.0e-88 328.6 175 84.6
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 3.0e-88 328.6 175 84.6
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 3.9e-88 328.2 175 84.6
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 5.1e-88 327.8 175 87.4
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 6.7e-88 327.4 174 86.2
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 6.7e-88 327.4 175 84.0
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 6.7e-88 327.4 175 84.0
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 1.5e-87 326.2 174 83.3
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 2.5e-87 325.5 175 82.9
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 3.3e-87 325.1 175 82.9
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 5.7e-87 324.3 175 85.7
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 5.7e-87 324.3 174 84.5
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.6e-86 322.8 173 85.5
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 6.3e-86 320.9 174 83.9
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 8.2e-86 320.5 174 81.6
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 5.0e-83 311.2 175 80.0
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 5.5e-82 307.8 172 82.0
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 9.4e-82 307.0 244 62.7
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.1e-77 292.0 173 75.1
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 3.1e-77 292.0 150 86.7
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 4.1e-77 291.6 171 76.0
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 9.4e-74 280.4 175 70.9
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 2.6e-71 272.3 181 72.4
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 2.0e-68 262.7 165 66.1
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 3.2e-66 255.4 167 73.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 4.2e-66 255.0 131 86.3
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 1.2e-65 253.4 131 87.0
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 1.2e-65 253.4 131 85.5
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 1.8e-64 249.6 164 66.5
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 2.7e-57 225.7 125 81.6
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 5.4e-53 211.5 124 76.6
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 5.4e-53 211.5 119 79.8
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 9.1e-53 210.7 112 83.9
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.2e-50 202.2 114 83.3
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 1.2e-49 200.3 167 54.5
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 4.7e-49 198.4 112 77.7
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.4e-48 196.8 125 70.4
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 5.7e-47 191.4 104 83.7
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.3e-43 180.3 142 63.4
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.1e-37 160.6 95 77.9
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 1.5e-34 150.2 88 77.3
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 4.4e-31 138.7 177 47.5
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 3.7e-30 135.6 109 60.6
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.4e-29 133.7 114 61.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 8.6e-27 124.4 66 84.8
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 9.2e-21 104.4 92 53.3


User provided reference genes

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