Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.9e-181 639.0 322 100.0
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.9e-127 457.6 295 83.7
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 2.0e-101 373.2 307 64.2
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 2.6e-101 372.9 307 65.5
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 4.8e-100 368.6 295 66.1
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.1e-99 367.5 307 64.8
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.0e-98 363.2 305 62.3
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.7e-97 360.1 303 63.7
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 2.9e-97 359.4 304 63.5
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 2.9e-97 359.4 295 65.8
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 3.8e-97 359.0 304 64.8
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.1e-96 357.5 304 62.5
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.5e-96 357.1 306 64.7
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.5e-96 357.1 303 63.0
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.2e-96 355.9 304 62.5
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 4.2e-96 355.5 305 63.6
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 4.2e-96 355.5 303 63.4
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.2e-95 354.0 286 66.8
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 3.6e-95 352.4 303 63.0
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 3.6e-95 352.4 307 62.5
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 4.7e-95 352.1 294 65.3
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 8.0e-95 351.3 316 61.1
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.4e-94 350.5 307 62.5
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 4.0e-94 349.0 293 65.5
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 5.2e-94 348.6 295 64.7
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 5.2e-94 348.6 307 61.6
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 5.2e-94 348.6 295 65.1
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 6.7e-94 348.2 306 61.4
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.5e-93 347.1 295 66.1
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.5e-93 347.1 305 61.3
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 1.5e-93 347.1 307 62.5
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 2.0e-93 346.7 294 64.3
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 5.7e-93 345.1 291 62.5
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 9.7e-93 344.4 306 61.1
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.3e-92 344.0 303 61.7
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.8e-92 342.8 292 63.0
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 3.7e-92 342.4 304 61.2
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.7e-92 342.4 294 62.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 3.7e-92 342.4 297 62.6
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 4.8e-92 342.0 302 60.3
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 4.8e-92 342.0 304 61.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 6.3e-92 341.7 285 64.2
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 8.2e-92 341.3 294 63.6
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 8.2e-92 341.3 294 62.6
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.1e-91 340.9 294 63.9
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.1e-91 340.9 294 63.3
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.4e-91 340.5 292 63.7
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 2.4e-91 339.7 297 61.3
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.2e-90 337.4 297 60.9
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.6e-90 337.0 323 57.9
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-90 337.0 315 59.0
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.5e-90 335.9 297 60.6
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 4.5e-90 335.5 295 62.0
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 7.7e-90 334.7 292 62.0
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 7.7e-90 334.7 293 62.1
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 1.3e-89 334.0 305 58.7
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.7e-89 333.6 342 57.3
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.2e-89 333.2 292 61.0
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 2.2e-89 333.2 292 62.0
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 2.9e-89 332.8 286 63.3
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.1e-88 330.9 309 58.9
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.9e-88 330.1 292 61.3
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.9e-88 330.1 311 58.5
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 2.5e-88 329.7 294 62.2
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 3.2e-88 329.3 301 60.1
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 3.2e-88 329.3 292 62.0
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 7.2e-88 328.2 309 58.6
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.1e-87 326.6 285 61.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.6e-87 325.9 283 60.1
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.4e-86 323.9 308 58.1
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.8e-86 323.6 309 58.6
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.8e-86 323.6 309 57.3
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.8e-86 323.6 309 57.3
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.3e-86 323.2 295 62.4
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 4.0e-86 322.4 293 62.1
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 4.0e-86 322.4 309 57.6
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 5.2e-86 322.0 309 58.3
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 5.2e-86 322.0 309 57.3
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 6.8e-86 321.6 292 61.0
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 6.8e-86 321.6 333 56.8
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 6.8e-86 321.6 297 59.9
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 1.2e-85 320.9 309 57.0
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.0e-85 320.1 317 57.4
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 3.4e-85 319.3 309 57.6
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 5.7e-85 318.5 282 61.0
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-84 317.4 321 55.8
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 1.7e-84 317.0 309 56.6
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 2.2e-84 316.6 309 56.0
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 2.8e-84 316.2 297 59.6
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.7e-84 315.8 292 59.6
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.4e-83 313.9 322 54.3
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 3.1e-83 312.8 307 57.0
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 2.7e-82 309.7 318 54.1
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-81 307.8 299 56.5
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-81 307.4 298 56.7
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-81 306.6 298 56.4
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.9e-81 306.2 306 56.2
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.2e-80 302.4 242 67.8
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.2e-79 300.8 372 50.0
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.2e-77 294.3 299 56.5
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.7e-76 290.4 307 52.8
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.0e-73 281.2 242 63.2
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 3.8e-73 279.3 286 54.9
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 9.5e-72 274.6 291 51.5
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 9.5e-72 274.6 233 63.1
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.4e-70 270.8 246 58.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 4.4e-69 265.8 260 56.5
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 4.9e-68 262.3 244 57.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 6.4e-68 261.9 300 50.7
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.8e-67 260.4 299 51.2
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 3.5e-66 256.1 312 49.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.2e-63 245.4 194 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.3e-62 243.4 315 46.7
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 9.8e-61 238.0 295 48.5
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.2e-60 236.9 193 63.2
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-56 224.6 203 59.6
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.5e-56 224.2 266 49.2
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 5.6e-56 222.2 234 54.3
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 6.2e-55 218.8 295 45.1
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.1e-54 218.0 206 57.3
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.0e-49 199.9 179 62.0
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 5.2e-46 189.1 177 60.5
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 8.9e-46 188.3 183 58.5
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 9.9e-45 184.9 199 51.8
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.3e-44 184.5 319 36.4
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.4e-43 180.3 175 59.4
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.2e-39 165.6 301 39.5
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.9e-36 156.8 323 33.7
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 5.4e-35 152.5 287 34.5
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.1e-34 150.6 129 62.0
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.0e-33 146.7 99 69.7
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.1e-30 138.3 166 51.2
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.8e-30 137.5 329 30.7
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 3.8e-28 129.8 265 33.6
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 2.5e-24 117.1 121 55.4
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.6e-23 114.4 87 66.7
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 4.8e-23 112.8 338 30.2
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 2.6e-21 107.1 70 68.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 8.7e-17 92.0 114 50.0
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.5e-16 91.3 71 60.6
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 3.3e-16 90.1 133 42.9
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.1e-15 87.4 194 35.1
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.8e-15 86.3 102 53.9
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.4e-14 84.7 102 52.9
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.8e-14 84.3 116 46.6
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 4.0e-14 83.2 80 55.0
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 2.5e-08 63.9 53 62.3
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.1e-07 60.8 42 71.4
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 8.2e-07 58.9 103 40.8


User provided reference genes

Program Settings