Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001400 Vanilla planifolia HOM05D002553 ORTHO05D002767 8.7e-75 283.5 138 100.0
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 4.2e-69 264.6 130 97.7
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 3.7e-65 251.5 130 91.5
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 1.2e-63 246.5 130 90.0
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 1.2e-63 246.5 130 90.0
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.2e-63 246.5 130 90.0
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 4.5e-63 244.6 130 88.5
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 4.5e-63 244.6 130 89.2
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 4.5e-63 244.6 130 88.5
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 1.3e-62 243.0 131 87.0
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 1.7e-62 242.7 130 88.5
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 2.2e-62 242.3 130 86.9
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 2.2e-62 242.3 130 87.7
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 2.2e-62 242.3 130 88.5
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 3.8e-62 241.5 130 86.2
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 3.8e-62 241.5 130 86.2
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 5.0e-62 241.1 130 86.9
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 5.0e-62 241.1 130 86.2
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 6.5e-62 240.7 130 86.2
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 8.5e-62 240.4 130 86.2
Dinv22901 Davidia involucrata HOM05D002553 ORTHO05D002767 8.5e-62 240.4 130 86.2
Dinv23976 Davidia involucrata HOM05D002553 ORTHO05D002767 8.5e-62 240.4 130 86.2
Glyma.10G156701 Glycine max HOM05D002553 ORTHO05D002767 8.5e-62 240.4 130 85.4
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 1.1e-61 240.0 130 86.9
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 1.1e-61 240.0 130 86.9
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.1e-61 240.0 130 87.7
AUR62000869 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.2
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.2
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.2
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.2
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.2
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.4e-61 239.6 130 86.9
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 1.9e-61 239.2 130 85.4
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.9e-61 239.2 130 86.2
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 1.9e-61 239.2 130 86.2
Solyc01g098700.4 Solanum lycopersicum HOM05D002553 ORTHO05D002767 1.9e-61 239.2 130 86.2
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 1.9e-61 239.2 130 86.2
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.5e-61 238.8 133 84.2
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 2.5e-61 238.8 130 85.4
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 2.5e-61 238.8 130 85.4
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 3.2e-61 238.4 130 86.9
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 3.2e-61 238.4 130 86.9
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 3.2e-61 238.4 130 86.2
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 3.2e-61 238.4 130 86.2
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 3.2e-61 238.4 130 86.2
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 4.2e-61 238.0 130 85.4
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 5.5e-61 237.7 130 86.2
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 5.5e-61 237.7 130 85.4
HanXRQChr02g0037091 Helianthus annuus HOM05D002553 ORTHO05D002767 5.5e-61 237.7 130 85.4
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 5.5e-61 237.7 130 85.4
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 5.5e-61 237.7 130 86.9
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.2e-61 237.3 130 85.4
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 7.2e-61 237.3 130 84.6
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 7.2e-61 237.3 130 84.6
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 7.2e-61 237.3 130 84.6
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 7.2e-61 237.3 130 86.2
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 9.4e-61 236.9 130 84.6
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 9.4e-61 236.9 130 86.2
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 9.4e-61 236.9 130 85.4
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 1.2e-60 236.5 130 86.2
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.2e-60 236.5 133 82.7
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 1.2e-60 236.5 130 84.6
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 1.2e-60 236.5 130 84.6
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 1.6e-60 236.1 130 86.2
arahy.Tifrunner.gnm1.ann1.FC6WKF Arachis hypogaea HOM05D002553 ORTHO05D002767 1.6e-60 236.1 130 84.6
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.6e-60 236.1 130 86.2
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 2.1e-60 235.7 130 84.6
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 2.1e-60 235.7 130 84.6
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 2.7e-60 235.3 130 86.2
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 2.7e-60 235.3 130 83.8
Oeu012095.1 Olea europaea HOM05D002553 ORTHO05D002767 2.7e-60 235.3 130 84.6
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 2.7e-60 235.3 130 86.2
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 3.6e-60 235.0 130 85.4
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 3.6e-60 235.0 130 86.2
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 4.7e-60 234.6 130 85.4
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 85.4
BcaC04g23681 Brassica carinata HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 84.6
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 84.6
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 85.4
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 84.6
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 84.6
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 85.4
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 85.4
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 6.1e-60 234.2 130 84.6
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 86.2
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 84.6
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 85.4
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 85.4
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 85.4
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 85.4
Oeu013074.1 Olea europaea HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 83.8
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 7.9e-60 233.8 130 84.6
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 1.0e-59 233.4 130 86.2
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 1.0e-59 233.4 131 84.0
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 1.4e-59 233.0 130 85.4
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 1.8e-59 232.6 130 84.6
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 1.8e-59 232.6 130 83.8
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 1.8e-59 232.6 130 84.6
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 1.8e-59 232.6 144 79.2
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 2.3e-59 232.3 130 85.4
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 2.3e-59 232.3 130 85.4
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 3.0e-59 231.9 130 82.3
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 3.9e-59 231.5 131 84.0
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.1e-58 229.9 130 83.1
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 1.5e-58 229.6 130 83.8
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 1.5e-58 229.6 130 82.3
Gohir.A13G107200 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.0e-58 229.2 130 83.8
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 3.3e-58 228.4 130 81.5
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 3.3e-58 228.4 156 73.7
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 4.4e-58 228.0 130 83.1
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 4.4e-58 228.0 130 81.5
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 5.7e-58 227.6 130 82.3
BolC1t05707H Brassica oleracea HOM05D002553 ORTHO05D002767 1.3e-57 226.5 130 83.1
CSS0016581 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.3e-57 226.5 130 80.8
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.7e-57 226.1 145 76.6
CSS0026671 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 6.3e-57 224.2 130 80.0
arahy.Tifrunner.gnm1.ann1.T73DMJ Arachis hypogaea HOM05D002553 ORTHO05D002767 1.7e-54 216.1 136 76.5
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 7.2e-53 210.7 182 61.5
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 1.2e-52 209.9 116 85.3
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 1.2e-52 209.9 116 85.3
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.6e-52 208.4 116 82.8
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 6.1e-52 207.6 116 82.8
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 1.5e-50 203.0 110 87.3
CBR_g26135 Chara braunii HOM05D002553 ORTHO05D002767 3.3e-50 201.8 130 74.6
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 4.8e-49 198.0 119 81.5
BcaB04g21368 Brassica carinata HOM05D002553 ORTHO05D002767 3.1e-48 195.3 130 74.6
AUR62005107 Chenopodium quinoa HOM05D002553 ORTHO05D002767 4.1e-48 194.9 130 74.6
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.3e-46 189.9 130 71.5
arahy.Tifrunner.gnm1.ann1.EXNL9P Arachis hypogaea HOM05D002553 ORTHO05D002767 1.9e-37 159.5 114 70.2
SGA_v2.0_scaffold232G43477 Striga asiatica HOM05D002553 ORTHO05D002767 4.4e-34 148.3 83 84.3
VMungo1080G0516 Vigna mungo HOM05D002553 ORTHO05D002767 1.0e-30 137.1 77 83.1
MD12G1223700 Malus domestica HOM05D002553 ORTHO05D002767 3.7e-25 118.6 69 79.7
PRCOL_00000574 Prasinoderma coloniale HOM05D002553 ORTHO05D002767 6.8e-19 97.8 138 39.1
Cre10.g458050 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 1.3e-17 93.6 139 38.1
Gohir.D05G181050 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.1e-16 90.5 51 80.4
Gohir.D07G194066 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.1e-16 90.5 51 80.4
Gorai.005G154800 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.1e-16 90.5 51 80.4
Gorai.012G108000 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.1e-16 90.5 51 80.4
Gohir.D03G082850 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.1e-16 88.6 51 78.4
BcaB04g19667 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-15 87.0 53 75.5
MCO02G411 Micromonas commoda HOM05D002553 ORTHO05D002767 1.7e-14 83.2 132 34.8
Gorai.010G125000 Gossypium raimondii HOM05D002553 ORTHO05D002767 3.0e-14 82.4 51 74.5
Gohir.A12G276200 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.7e-12 75.1 38 86.8
Gorai.012G097400 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.8e-11 73.2 38 84.2
Oeu064147.1 Olea europaea HOM05D002553 ORTHO05D002767 1.2e-10 70.5 38 78.9
Gohir.D07G108333 Gossypium hirsutum HOM05D002553 ORTHO05D002767 3.4e-10 68.9 38 81.6
Gorai.001G217100 Gossypium raimondii HOM05D002553 ORTHO05D002767 5.8e-10 68.2 35 82.9
PGSC0003DMG401028577 Solanum tuberosum HOM05D002553 ORTHO05D002767 7.5e-10 67.8 33 93.9
TPR.G3067 Trifolium pratense HOM05D002553 ORTHO05D038995 1.0e-06 57.4 29 86.2
EL10Ac1g01938 Beta vulgaris HOM05D002553 ORTHO05D038995 3.0e-06 55.8 29 82.8


User provided reference genes

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