Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.0e-102 375.2 186 100.0
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 3.0e-102 375.2 186 100.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.4e-96 355.5 186 95.2
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 1.6e-76 289.7 188 81.4
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 4.9e-73 278.1 188 77.7
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 2.2e-65 252.7 190 75.3
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.8e-36 156.0 188 47.3
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 4.7e-31 138.7 105 64.8
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 4.0e-30 135.6 105 64.8
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 3.4e-29 132.5 103 67.0
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 4.4e-29 132.1 103 61.2
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 7.5e-29 131.3 103 65.0
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 9.8e-29 131.0 103 66.0
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.8e-28 129.4 101 62.4
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 4.8e-28 128.6 189 41.8
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 1.4e-27 127.1 193 42.0
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 7.0e-27 124.8 101 59.4
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 9.1e-27 124.4 96 63.5
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 9.1e-27 124.4 188 41.0
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.2e-26 124.0 101 59.4
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.6e-26 123.6 171 41.5
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 5.9e-26 121.7 101 57.4
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.0e-25 120.9 171 43.9
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.0e-25 120.9 188 41.5
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 1.3e-25 120.6 103 63.1
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.3e-25 120.6 99 63.6
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.7e-25 120.2 181 40.9
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.9e-25 119.4 101 60.4
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.8e-25 119.0 105 54.3
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 3.8e-25 119.0 101 58.4
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.8e-25 119.0 101 60.4
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 6.6e-25 118.2 169 40.8
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 8.6e-25 117.9 101 62.4
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.1e-24 117.5 99 63.6
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 1.5e-24 117.1 103 59.2
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.9e-24 116.7 101 60.4
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 3.3e-24 115.9 102 55.9
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 3.3e-24 115.9 102 55.9
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 5.5e-24 115.2 101 55.4
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 5.5e-24 115.2 98 58.2
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 2.3e-22 109.8 105 53.3
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 5.2e-22 108.6 101 56.4
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 5.2e-22 108.6 99 55.6
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 5.2e-22 108.6 105 52.4
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 8.9e-22 107.8 102 54.9
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 1.2e-21 107.5 101 56.4
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.6e-21 106.3 103 56.3
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 9.8e-21 104.4 98 52.0
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.7e-20 103.6 103 51.5
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.7e-20 103.6 99 50.5
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 2.2e-20 103.2 103 50.5
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 2.2e-20 103.2 103 50.5
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 2.2e-20 103.2 103 50.5
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 2.2e-20 103.2 103 50.5
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 2.2e-20 103.2 98 54.1
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 2.8e-20 102.8 99 52.5
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 6.3e-20 101.7 94 54.3
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 1.1e-19 100.9 178 42.1
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.1e-19 100.9 98 53.1
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.1e-19 100.9 97 54.6
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.4e-19 100.5 101 54.5
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.4e-19 100.5 100 53.0
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.8e-19 100.1 103 53.4
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.8e-19 100.1 102 50.0
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.4e-19 99.8 104 54.8
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 2.4e-19 99.8 97 54.6
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 5.4e-19 98.6 88 56.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 7.0e-19 98.2 92 54.3
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 5.9e-18 95.1 103 50.5
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 7.8e-18 94.7 100 47.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.0e-17 94.4 102 49.0
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.7e-17 93.6 98 48.0
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.7e-17 93.6 105 49.5
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 6.6e-17 91.7 96 49.0
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.5e-16 90.5 105 48.6
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-16 90.5 86 52.3
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.3e-16 89.4 103 39.8
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 1.2e-15 87.4 105 41.9
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 1.6e-15 87.0 103 44.7
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.1e-15 86.7 101 50.5
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 2.8e-15 86.3 94 45.7
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 4.7e-15 85.5 103 45.6
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 3.1e-14 82.8 103 40.8
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-14 82.0 102 44.1
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 6.8e-14 81.6 106 42.5
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 4.4e-13 79.0 100 45.0
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 1.7e-12 77.0 101 44.6
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.9e-12 76.3 105 44.8
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 3.7e-12 75.9 104 43.3
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 4.9e-12 75.5 70 60.0
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 8.3e-12 74.7 70 54.3
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.1e-11 74.3 101 41.6
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.6e-10 70.5 74 47.3
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 2.7e-10 69.7 102 38.2
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.0e-09 67.8 100 37.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 1.0e-09 67.8 98 39.8
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 8.6e-09 64.7 64 54.7
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 8.9e-06 54.7 47 51.1


User provided reference genes

Program Settings