Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 2397.5 1196 100.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 2385.9 1196 99.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 2343.5 1196 97.7
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 2163.7 1197 89.0
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 2111.6 1198 86.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 2070.4 1237 83.3
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1872.8 1202 75.8
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1867.8 1200 76.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1867.0 1202 75.0
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1865.1 1202 75.5
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1855.1 1198 74.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1841.6 1201 75.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1835.5 1170 75.6
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1830.5 1200 74.1
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1830.1 1199 74.1
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1815.4 1201 73.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1796.2 1198 72.9
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1785.4 1201 72.9
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1780.8 1204 72.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1774.6 1193 72.1
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1771.5 1202 72.0
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1771.1 1202 72.0
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1770.7 1182 71.7
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1769.2 1197 72.4
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1767.7 1202 72.0
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1764.2 1192 72.4
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1754.6 1200 70.9
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1753.8 1225 69.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1741.1 1191 71.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1739.9 1189 71.1
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1739.2 1178 71.2
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1738.0 1214 69.2
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1738.0 1199 69.9
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1737.6 1198 69.7
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1734.5 1199 69.5
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1734.2 1201 69.4
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1732.2 1304 66.3
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1731.5 1198 70.1
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1729.9 1199 70.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1724.1 1198 69.5
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1723.4 1194 70.0
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1722.2 1205 69.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1722.2 1198 69.4
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1721.8 1197 68.6
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1713.0 1205 68.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1713.0 1199 69.0
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1704.9 1195 69.7
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1702.2 1204 69.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1696.0 1203 68.6
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1694.9 1190 69.1
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1694.5 1209 68.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1691.8 1191 68.4
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1676.4 1200 67.8
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1672.1 1198 68.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1671.8 1197 68.4
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1671.8 1200 68.2
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1668.3 1200 68.1
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1665.6 1192 68.0
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1662.5 1139 69.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1199 67.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1655.6 1198 68.0
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1653.3 1199 67.6
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1651.3 1198 67.2
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1645.9 1199 67.4
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1193 68.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1640.9 1203 67.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1639.0 1194 66.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1192 67.2
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1635.9 1191 66.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1635.2 1197 66.8
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1629.4 1223 66.2
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1627.1 1192 66.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1625.9 1186 66.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1625.5 1202 66.2
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1239 64.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1621.3 1192 65.8
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1615.5 1199 65.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1599.7 1194 65.6
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1598.9 1157 67.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1187 65.9
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1581.2 1263 62.0
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1577.4 1197 65.3
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1576.6 1199 65.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1154 65.9
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1567.4 1197 65.0
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1021 74.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1555.0 1246 61.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1549.6 1178 64.1
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1527.7 1239 61.7
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1515.0 1190 61.7
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1469.9 1021 71.0
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1465.3 1278 58.8
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1456.4 1191 59.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1422.5 969 72.0
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1414.4 1191 58.4
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1411.7 1206 57.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1366.7 986 69.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1364.7 1200 59.3
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1340.5 1189 58.7
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1312.7 1199 58.5
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1289.6 1210 56.6
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1218.4 1206 51.5
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1208.4 1209 50.5
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1203.3 1214 51.6
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1168.7 1170 49.3
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1157.9 839 67.2
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1122.8 855 67.0
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 4.7e-310 1068.1 770 67.8
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.1e-306 1057.0 711 71.7
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.4e-285 986.9 717 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.1e-261 907.5 1072 44.9
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.2e-243 846.7 587 69.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 6.5e-243 845.1 1100 42.5
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.8e-238 829.7 1165 42.9
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.4e-213 746.9 562 67.4
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.4e-208 731.1 484 72.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 5.2e-208 729.2 754 53.8
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.1e-197 693.0 480 70.4
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.2e-153 547.7 387 70.5
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 9.4e-149 532.3 411 64.7
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.4e-144 517.7 589 50.6
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.6e-132 477.2 716 40.4
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 4.1e-104 384.0 259 70.3
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.3e-94 351.7 374 49.7
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.7e-79 301.6 274 58.4
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.4e-67 261.9 179 70.9
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.3e-62 246.1 202 61.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.4e-59 236.1 285 43.2
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.5e-53 216.1 289 41.2
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.9e-51 207.2 235 47.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 9.0e-51 206.8 141 73.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.6e-31 141.7 161 49.1
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.1e-29 136.7 156 50.6
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.7e-23 114.8 72 70.8
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.7e-12 79.7 60 66.7
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 8.2e-12 77.4 128 33.6
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.1e-11 77.0 94 44.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.1e-11 77.0 77 49.4
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 6.5e-09 67.8 43 74.4
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 8.5e-09 67.4 59 59.3
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.1e-08 67.0 47 68.1
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 4.2e-08 65.1 53 56.6
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 2.1e-07 62.8 49 53.1
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.7e-07 61.6 78 43.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 4.7e-07 61.6 45 60.0


User provided reference genes

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