Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1934.5 1188 100.0
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1838.2 1188 94.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 0.0e+00 1590.1 1198 83.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1417.1 1198 77.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1388.6 1200 77.8
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1247.6 1162 68.8
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1242.6 1209 70.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1232.2 1217 69.7
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 0.0e+00 1204.5 1227 67.5
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 0.0e+00 1137.5 1210 58.6
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.6e-302 1043.1 956 68.2
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 5.1e-296 1021.5 807 70.8
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.2e-210 736.5 1186 53.2
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 4.1e-205 719.5 1260 50.6
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.5e-204 716.1 1255 47.6
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.7e-203 714.1 1244 52.1
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.5e-202 711.1 1219 50.8
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 5.5e-202 709.1 1211 50.3
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.1e-194 684.9 1259 48.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 4.7e-193 679.5 1023 52.4
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.5e-191 674.5 1205 47.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.9e-190 669.5 1236 49.0
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 2.7e-188 663.7 1241 46.3
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.9e-186 657.5 1206 44.9
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 7.1e-181 639.0 1032 48.9
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.7e-180 637.1 1233 45.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 5.6e-178 629.4 1273 47.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.8e-177 627.1 1221 48.1
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 4.1e-173 613.2 1251 44.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 8.6e-171 605.5 1253 46.5
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.8e-169 600.5 1203 47.3
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 7.8e-164 582.4 1090 41.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.3e-163 581.6 1208 47.6
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.4e-159 566.6 1208 47.5
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.4e-159 566.6 1208 47.3
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 5.8e-159 566.2 1216 47.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.9e-157 561.2 1243 45.9
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 7.1e-157 559.3 1217 42.7
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 5.1e-155 553.1 829 46.3
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 5.8e-151 539.7 1259 39.9
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-150 537.3 1243 45.1
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 7.9e-148 529.3 1308 41.7
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.3e-147 527.7 1208 46.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.9e-146 524.6 1176 43.3
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.3e-146 523.9 1161 43.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.9e-144 516.2 1200 46.0
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.0e-139 500.7 1228 41.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 6.7e-139 499.6 1223 37.9
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 3.1e-136 490.7 1166 42.0
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.3e-134 485.3 1312 33.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.1e-133 482.3 1222 40.9
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 4.3e-130 470.3 1134 42.9
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.3e-130 470.3 1061 41.7
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-127 462.2 1251 35.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.9e-127 459.9 1223 39.7
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.7e-126 458.4 1171 40.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.1e-125 455.7 1177 38.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.7e-121 440.7 1280 33.6
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.8e-121 440.3 1285 35.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.8e-121 440.3 1039 41.9
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.4e-120 438.0 1299 33.2
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 5.3e-120 436.8 1318 32.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.5e-119 433.7 824 38.8
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.2e-117 427.6 1024 40.3
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.6e-116 425.2 1123 38.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.7e-113 414.1 1201 35.3
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.8e-112 411.8 1216 40.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.6e-111 408.7 1249 36.7
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.0e-110 406.0 1237 40.2
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.3e-110 405.6 1245 38.6
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.1e-108 398.3 835 35.2
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.5e-106 392.1 1028 43.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.7e-105 388.7 1064 34.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.2e-103 382.5 1228 38.6
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.9e-103 380.2 1276 37.0
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.2e-102 378.3 1283 38.7
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.5e-101 375.6 1046 40.2
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.4e-99 369.0 812 34.9
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.3e-99 368.2 1329 31.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.3e-97 362.5 1273 35.0
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 9.1e-96 356.3 841 34.7
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.1e-93 349.4 994 36.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.9e-93 348.6 1387 32.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.0e-90 338.6 813 33.8
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.1e-88 331.3 817 33.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.1e-88 330.9 707 35.2
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 5.9e-87 327.0 1060 38.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.0e-86 323.9 598 37.8
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.2e-84 319.3 1227 36.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.2e-84 319.3 600 38.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.1e-84 317.0 822 34.5
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 8.0e-84 316.6 1250 32.5
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.0e-83 314.3 729 35.8
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 6.8e-83 313.5 730 35.3
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 2.6e-82 311.6 732 34.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.4e-82 310.8 793 33.8
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.2e-81 308.5 697 33.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.9e-81 307.4 822 34.2
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.1e-80 306.2 760 32.9
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.1e-80 306.2 1212 34.0
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.4e-80 305.1 691 34.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 5.4e-80 303.9 779 34.3
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.0e-80 303.5 786 35.0
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.2e-79 302.8 849 32.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.0e-79 302.0 971 32.4
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-78 299.3 1064 30.3
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 3.0e-78 298.1 1069 34.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.5e-77 295.0 776 33.1
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.3e-77 294.7 699 35.9
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 4.3e-77 294.3 1347 31.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.4e-75 289.3 655 37.1
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.1e-75 288.1 600 35.7
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 3.1e-75 288.1 1056 29.6
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.2e-73 282.0 827 31.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.4e-73 280.4 860 38.6
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 8.3e-73 280.0 1197 32.6
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-72 279.6 835 31.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.4e-72 278.5 1022 36.5
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.6e-71 275.8 1084 34.1
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.0e-70 270.8 634 34.5
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.5e-69 268.5 809 32.3
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.5e-69 268.5 809 32.3
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.3e-69 268.1 467 39.2
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.5e-69 266.5 669 33.5
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 4.7e-68 264.2 1384 30.7
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.7e-65 255.8 902 29.9
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.9e-65 255.0 971 37.7
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-64 253.1 821 31.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 7.1e-64 250.4 1271 26.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 7.1e-64 250.4 822 30.0
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 4.6e-63 247.7 829 30.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.9e-62 244.6 840 28.7
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.8e-60 238.4 778 30.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.6e-58 231.9 724 31.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 3.8e-49 201.4 419 35.1
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-48 199.9 805 28.1
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.7e-47 195.3 609 29.6
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.5e-47 194.9 648 30.1
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.3e-46 193.0 649 32.5
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-45 187.6 499 31.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.8e-44 185.3 722 29.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-42 179.9 1142 29.1
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.6e-42 178.7 671 29.7
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.6e-39 167.9 616 31.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.9e-37 162.5 629 28.5
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.3e-37 161.4 676 27.2
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 7.4e-37 160.6 593 28.2
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.8e-35 156.0 741 25.8
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.0e-30 140.2 398 30.4
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.5e-26 124.8 667 26.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.9e-25 121.3 529 27.6
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.9e-22 111.7 508 26.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.3e-21 108.6 438 26.9
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-20 105.9 690 24.2
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.3e-17 96.7 1031 27.1
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.6e-12 79.7 402 25.1
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.7e-10 70.9 526 28.3
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 2.5e-08 65.9 79 49.4
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 3.2e-08 65.5 91 53.8
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.2e-08 65.5 190 28.4
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.2e-08 65.5 190 28.4
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.0e-06 60.5 644 24.8


User provided reference genes

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