Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-121 439.9 222 100.0
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.5e-88 327.4 235 77.0
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 8.5e-88 327.4 235 77.0
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-77 293.9 234 70.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-70 269.6 187 79.1
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.7e-65 252.7 235 62.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.7e-65 251.1 183 76.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.8e-61 238.0 178 75.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.5e-60 236.9 223 61.4
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.8e-58 229.9 228 57.5
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.0e-57 226.5 231 56.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 5.9e-57 224.9 229 58.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 4.3e-55 218.8 235 53.6
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.2e-54 217.2 229 55.9
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.6e-54 216.9 229 55.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.6e-54 216.9 235 54.0
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.2e-53 211.8 134 84.3
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.5e-52 210.3 220 57.3
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 9.8e-52 207.6 235 53.2
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-51 204.9 163 73.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.1e-50 204.1 228 51.3
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.8e-50 203.4 230 52.6
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-50 203.4 237 51.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 7.0e-50 201.4 216 54.6
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 7.0e-50 201.4 227 56.4
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.2e-49 200.7 228 53.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.6e-49 200.3 234 51.7
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 4.6e-49 198.7 185 62.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.9e-49 198.4 236 49.6
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 7.8e-49 198.0 215 55.3
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.3e-48 197.2 236 52.1
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.7e-48 196.8 232 51.7
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.3e-48 196.4 230 51.3
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.3e-48 196.4 219 51.6
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.0e-48 196.1 210 55.2
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 3.9e-48 195.7 237 51.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 5.0e-48 195.3 193 57.5
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.6e-48 194.9 227 51.1
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 6.6e-48 194.9 209 54.5
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.9e-47 193.4 237 50.2
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.3e-47 192.6 219 52.1
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 4.3e-47 192.2 223 53.8
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.6e-47 191.8 209 52.6
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.3e-47 191.4 209 52.6
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 7.3e-47 191.4 209 56.0
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 9.5e-47 191.0 241 47.3
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.5e-47 191.0 224 47.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 9.5e-47 191.0 215 54.0
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.1e-46 189.9 217 52.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.8e-46 189.5 217 53.5
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 8.0e-46 188.0 221 50.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 8.0e-46 188.0 233 48.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.0e-45 187.6 222 50.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.4e-45 187.2 235 48.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.3e-45 186.4 225 51.6
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 3.1e-45 186.0 217 52.5
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 5.2e-45 185.3 198 51.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.6e-44 183.0 221 50.7
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.4e-44 182.6 231 49.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.5e-44 181.4 233 48.9
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 9.8e-44 181.0 225 48.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.7e-43 179.1 218 48.6
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 6.4e-43 178.3 232 49.6
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 6.4e-43 178.3 177 59.3
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.3e-43 177.9 227 48.0
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.1e-42 177.6 224 49.6
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.1e-42 177.6 215 49.3
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.9e-42 176.8 235 47.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.2e-42 176.0 184 52.7
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 3.2e-42 176.0 236 45.3
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 4.1e-42 175.6 215 48.8
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 4.1e-42 175.6 184 52.7
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 5.4e-42 175.3 226 49.1
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 7.0e-42 174.9 177 58.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 7.0e-42 174.9 230 45.2
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 9.2e-42 174.5 218 47.2
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.2e-42 174.5 208 54.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.2e-41 174.1 170 60.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.5e-41 172.6 235 47.2
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.6e-41 172.2 221 47.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.3e-40 169.9 223 44.4
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 5.0e-40 168.7 226 44.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.0e-40 168.7 176 55.7
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-39 166.4 184 50.5
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.5e-39 166.4 184 50.5
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.5e-39 166.4 226 43.8
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.5e-39 166.4 223 43.0
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.3e-39 166.0 218 45.9
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.6e-39 165.2 226 45.6
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 9.5e-39 164.5 184 48.9
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.2e-38 164.1 184 48.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 4.7e-38 162.2 222 44.6
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 6.2e-38 161.8 184 48.9
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 6.2e-38 161.8 218 45.9
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 6.2e-38 161.8 185 48.6
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.4e-37 160.6 223 41.3
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.3e-37 159.8 186 49.5
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.1e-37 159.5 186 49.5
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.1e-37 159.5 234 43.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-36 156.8 87 90.8
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.2e-33 147.5 185 45.9
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-33 147.1 143 61.5
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-33 146.7 110 76.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.1e-33 146.7 193 45.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.3e-32 144.1 199 44.7
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-31 141.0 88 83.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.9e-31 140.2 90 80.0
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 3.3e-31 139.4 190 44.2
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.4e-29 134.0 187 43.3
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.2e-27 126.7 182 44.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.1e-23 114.4 186 41.9
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.3e-23 112.5 137 48.2
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.3e-23 111.7 142 47.9
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-22 110.9 133 48.9
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.6e-22 109.4 75 74.7
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 4.7e-22 109.0 146 43.2
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-19 100.9 100 66.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.4e-19 98.2 102 59.8
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.9e-18 97.1 130 50.8
Gohir.A03G060800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.2e-18 95.9 88 68.2
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-17 93.2 71 69.0
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.6e-17 92.4 84 53.6
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-16 90.5 50 92.0
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.3e-16 90.1 97 55.7
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-12 77.8 56 71.4
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.2e-11 73.6 72 54.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.2e-11 73.6 38 92.1
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.1e-10 71.2 69 49.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.4e-10 70.1 87 43.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 3.5e-09 66.2 186 28.5
Gohir.A04G093000 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-08 62.8 35 85.7
Gohir.A06G146400 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-08 62.8 35 85.7
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.9e-08 62.8 116 37.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.5e-07 60.1 45 66.7


User provided reference genes

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