Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G041000 Glycine max HOM05D006850 ORTHO05D008545 2.0e-174 615.5 283 100.0
Glyma.07G232000 Glycine max HOM05D006850 ORTHO05D008545 1.9e-140 502.7 248 90.7
VMungo0540G1950 Vigna mungo HOM05D006850 ORTHO05D008545 9.7e-137 490.3 270 82.2
Phvul.006G014500 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 1.2e-123 446.8 250 81.6
Lj6g0025243 Lotus japonicus HOM05D006850 ORTHO05D008545 8.2e-112 407.5 263 73.4
Lalb_Chr21g0314461 Lupinus albus HOM05D006850 ORTHO05D008545 4.0e-106 388.7 228 75.4
Ca_03895_v3 Cicer arietinum L. HOM05D006850 ORTHO05D008545 1.2e-105 387.1 249 72.7
Phvul.009G232900 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 2.8e-104 382.5 244 74.2
Medtr0180s0050 Medicago truncatula HOM05D006850 ORTHO05D008545 4.1e-103 378.6 269 66.5
Psat0s3115g0040 Pisum sativum HOM05D006850 ORTHO05D008545 4.5e-102 375.2 245 71.8
arahy.Tifrunner.gnm1.ann1.TFQN26 Arachis hypogaea HOM05D006850 ORTHO05D008545 6.1e-99 364.8 246 70.3
arahy.Tifrunner.gnm1.ann1.5G2EZD Arachis hypogaea HOM05D006850 ORTHO05D008545 3.4e-97 359.0 246 69.1
TPR.G16604 Trifolium pratense HOM05D006850 ORTHO05D008545 7.0e-95 351.3 195 79.5
Cfa009858 Carpinus fangiana HOM05D006850 ORTHO05D008545 1.6e-94 350.1 239 66.5
QL01p017096 Quercus lobata HOM05D006850 ORTHO05D008545 7.7e-94 347.8 240 65.8
Haze_23232 Corylus avellana HOM05D006850 ORTHO05D008545 1.4e-90 337.0 239 64.0
Prupe.4G265500 Prunus persica HOM05D006850 ORTHO05D008545 3.0e-90 335.9 242 65.3
Duzib150G1265 Durio zibethinus HOM05D006850 ORTHO05D008545 7.5e-89 331.3 240 65.0
CiPaw.14G112900 Carya illinoinensis HOM05D006850 ORTHO05D008545 9.8e-89 330.9 242 62.8
PGR102G2982 Punica granatum HOM05D006850 ORTHO05D008545 3.7e-88 328.9 240 61.7
MD03G1165500 Malus domestica HOM05D006850 ORTHO05D008545 1.4e-87 327.0 243 63.0
TWI31G0452 Tripterygium wilfordii HOM05D006850 ORTHO05D008545 1.8e-87 326.6 238 60.5
ClCG02G022830 Citrullus lanatus HOM05D006850 ORTHO05D008545 2.0e-86 323.2 248 59.7
Potri.001G275300 Populus trichocarpa HOM05D006850 ORTHO05D008545 2.0e-86 323.2 237 62.4
Dinv36163 Davidia involucrata HOM05D006850 ORTHO05D008545 3.5e-86 322.4 249 62.7
Duzib170G0642 Durio zibethinus HOM05D006850 ORTHO05D008545 4.5e-86 322.0 240 61.7
Manes.02G139100 Manihot esculenta HOM05D006850 ORTHO05D008545 1.3e-85 320.5 248 62.5
Rhsim13G0209200 Rhododendron simsii HOM05D006850 ORTHO05D008545 8.6e-85 317.8 240 60.4
Hund07436 Selenicereus undatus HOM05D006850 ORTHO05D008545 1.1e-84 317.4 229 63.3
Sc06g0004690 Simmondsia chinensis HOM05D006850 ORTHO05D008545 1.1e-84 317.4 235 63.4
Actinidia06966 Actinidia chinensis HOM05D006850 ORTHO05D008545 2.5e-84 316.2 233 63.1
Sabra16G0169600 Salix brachista HOM05D006850 ORTHO05D008545 2.5e-84 316.2 265 56.6
Gohir.D07G123600 Gossypium hirsutum HOM05D006850 ORTHO05D008545 3.3e-84 315.8 240 62.1
GSVIVG01037285001 Vitis vinifera HOM05D006850 ORTHO05D008545 4.3e-84 315.5 236 61.4
Gorai.001G133600 Gossypium raimondii HOM05D006850 ORTHO05D008545 5.6e-84 315.1 240 62.1
CANSAT54G0445 Cannabis sativa HOM05D006850 ORTHO05D008545 4.7e-83 312.0 246 59.8
Hma1.2p1_0262F.1_g105345 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 4.7e-83 312.0 245 60.0
Hma1.2p1_3601F.1_g336990 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 4.7e-83 312.0 245 60.0
Gohir.A07G119400 Gossypium hirsutum HOM05D006850 ORTHO05D008545 2.3e-82 309.7 240 61.7
RcHm_v2.0_Chr5g0050481 Rosa chinensis HOM05D006850 ORTHO05D008545 4.0e-82 308.9 260 60.0
CsaV3_6G038970 Cucumis sativus L. HOM05D006850 ORTHO05D008545 6.8e-82 308.1 245 58.4
Oeu030634.1 Olea europaea HOM05D006850 ORTHO05D008545 1.2e-81 307.4 240 57.9
MELO3C014560.2 Cucumis melo HOM05D006850 ORTHO05D008545 2.6e-81 306.2 249 58.6
CSS0022862 Camellia sinensis var. sinensis HOM05D006850 ORTHO05D008545 5.8e-81 305.1 240 59.6
Eucgr.B03735 Eucalyptus grandis HOM05D006850 ORTHO05D008545 5.8e-81 305.1 240 59.2
vmacro04034 Vaccinium macrocarpon HOM05D006850 ORTHO05D008545 9.8e-81 304.3 240 58.8
Ah.06g194580 Amaranthus hybridus HOM05D006850 ORTHO05D008545 6.4e-80 301.6 231 61.5
EL10Ac4g10117 Beta vulgaris HOM05D006850 ORTHO05D008545 6.4e-80 301.6 231 59.7
Cc01_g05370 Coffea canephora HOM05D006850 ORTHO05D008545 3.2e-79 299.3 241 56.4
Atru.chr3.2891 Acer truncatum HOM05D006850 ORTHO05D008545 7.0e-79 298.1 244 58.6
AUR62000194 Chenopodium quinoa HOM05D006850 ORTHO05D008545 9.2e-79 297.7 244 58.6
Sopen01g004290 Solanum pennellii HOM05D006850 ORTHO05D008545 9.2e-79 297.7 230 59.6
MSTRG.18462 Avicennia marina HOM05D006850 ORTHO05D008545 1.6e-78 297.0 241 56.4
Hund21980 Selenicereus undatus HOM05D006850 ORTHO05D008545 2.0e-78 296.6 189 68.8
Cpa.g.sc157.64 Carica papaya HOM05D006850 ORTHO05D008545 6.0e-78 295.0 232 60.8
Solyc01g008780.3 Solanum lycopersicum HOM05D006850 ORTHO05D008545 7.8e-78 294.7 227 59.9
PGSC0003DMG400022716 Solanum tuberosum HOM05D006850 ORTHO05D008545 2.3e-77 293.1 230 58.3
Ciclev10016719m.g Citrus clementina HOM05D006850 ORTHO05D008545 3.0e-77 292.7 209 65.6
Sed0015967 Sechium edule HOM05D006850 ORTHO05D008545 2.5e-76 289.7 248 56.0
Migut.D00666 Erythranthe guttata HOM05D006850 ORTHO05D008545 4.3e-76 288.9 243 55.1
Peaxi162Scf00032g02418 Petunia axillaris HOM05D006850 ORTHO05D008545 4.3e-76 288.9 220 58.2
SalBow6G2930 Salvia bowleyana HOM05D006850 ORTHO05D008545 4.3e-76 288.9 231 59.7
SGA_v2.0_scaffold29G12238 Striga asiatica HOM05D006850 ORTHO05D008545 7.3e-76 288.1 226 58.8
TAR633G0745 Trochodendron aralioides HOM05D006850 ORTHO05D008545 7.3e-76 288.1 215 60.9
DCAR_024408 Daucus carota HOM05D006850 ORTHO05D008545 1.6e-75 287.0 269 51.7
ECA238G2187 Erigeron canadensis HOM05D006850 ORTHO05D008545 1.6e-75 287.0 221 59.7
FAN16G3159 Fragaria x ananassa HOM05D006850 ORTHO05D008545 1.1e-74 284.3 237 59.9
HanXRQChr14g0427601 Helianthus annuus HOM05D006850 ORTHO05D008545 1.8e-74 283.5 191 65.4
Sed0010964 Sechium edule HOM05D006850 ORTHO05D008545 1.8e-74 283.5 239 54.8
FAN21G1525 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.1e-74 282.7 237 59.9
FAN25G3781 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.1e-74 282.7 237 59.9
AUR62006544 Chenopodium quinoa HOM05D006850 ORTHO05D008545 4.0e-74 282.3 232 59.5
FvH4_3g27811 Fragaria vesca HOM05D006850 ORTHO05D008545 5.2e-74 282.0 237 59.9
Thhalv10026099m.g Eutrema salsugineum HOM05D006850 ORTHO05D008545 6.8e-74 281.6 243 57.6
Lsat_1_v5_gn_2_3500 Lactuca sativa HOM05D006850 ORTHO05D008545 8.9e-74 281.2 198 62.6
Aqoxy1G00367 Aquilegia oxysepala HOM05D006850 ORTHO05D008545 2.6e-73 279.6 231 59.3
CAN.G64.14 Capsicum annuum HOM05D006850 ORTHO05D008545 2.6e-73 279.6 261 51.7
AL7G23370 Arabidopsis lyrata HOM05D006850 ORTHO05D008545 1.3e-72 277.3 193 65.3
AT4G29070 Arabidopsis thaliana HOM05D006850 ORTHO05D008545 2.9e-72 276.2 193 65.3
BolC1t01003H Brassica oleracea HOM05D006850 ORTHO05D008545 1.1e-71 274.2 242 57.0
CARHR236810 Cardamine hirsuta HOM05D006850 ORTHO05D008545 1.1e-71 274.2 193 64.2
Carub.0007s1152 Capsella rubella HOM05D006850 ORTHO05D008545 1.4e-71 273.9 194 65.5
BcaC07g38376 Brassica carinata HOM05D006850 ORTHO05D008545 2.4e-71 273.1 226 56.6
C08p11310 Brassica napus HOM05D006850 ORTHO05D008545 2.4e-71 273.1 226 56.6
Aa31LG2G21380 Aethionema arabicum HOM05D006850 ORTHO05D008545 3.2e-71 272.7 240 54.6
Sp7g27010 Schrenkiella parvula HOM05D006850 ORTHO05D008545 3.2e-71 272.7 245 56.7
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 4.1e-71 272.3 192 65.1
Manes.01G178500 Manihot esculenta HOM05D006850 ORTHO05D008545 4.1e-71 272.3 220 59.5
THA.LOC104826454 Tarenaya hassleriana HOM05D006850 ORTHO05D008545 5.4e-71 271.9 246 55.3
Thecc.09G248000 Theobroma cacao HOM05D006850 ORTHO05D008545 7.0e-71 271.6 196 64.3
PSO384G2311 Papaver somniferum HOM05D006850 ORTHO05D008545 9.2e-71 271.2 233 58.8
PSO339G1255 Papaver somniferum HOM05D006850 ORTHO05D008545 4.6e-70 268.9 233 57.9
unitig_0.g300 Utricularia gibba HOM05D006850 ORTHO05D008545 4.6e-70 268.9 247 54.3
BcaC09g51693 Brassica carinata HOM05D006850 ORTHO05D008545 6.6e-69 265.0 241 55.2
BolC8t48803H Brassica oleracea HOM05D006850 ORTHO05D008545 1.5e-68 263.8 224 56.2
COL.COLO4_32765 Corchorus olitorius HOM05D006850 ORTHO05D008545 2.5e-68 263.1 222 58.6
Nn7g36731 Nelumbo nucifera HOM05D006850 ORTHO05D008545 4.3e-68 262.3 202 59.9
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 1.6e-67 260.4 170 67.6
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 1.6e-67 260.4 170 67.6
Nitab4.5_0000718g0310 Nicotiana tabacum HOM05D006850 ORTHO05D008545 1.6e-67 260.4 219 56.2
Nitab4.5_0003488g0060 Nicotiana tabacum HOM05D006850 ORTHO05D008545 6.2e-67 258.5 230 54.8
MBI07_g26873_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 5.8e-65 251.9 232 56.5
MBI07_g21930_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 1.9e-63 246.9 240 54.6
CDE09G0720 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 2.8e-59 233.0 177 60.5
Lj1P279T21 Lonicera japonica HOM05D006850 ORTHO05D008545 6.2e-59 231.9 160 62.5
ATR0745G042 Amborella trichopoda HOM05D006850 ORTHO05D008545 8.1e-59 231.5 123 78.9
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 4.0e-58 229.2 216 53.7
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 4.0e-58 229.2 204 55.9
HPP92_025151 Vanilla planifolia HOM05D006850 ORTHO05D008545 2.4e-55 219.9 123 74.8
CDE08G0294 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 7.1e-55 218.4 140 67.9
SHI34292 Sapria himalayana HOM05D006850 ORTHO05D008545 9.0e-50 201.4 182 54.9
SEGI_38632 Sequoiadendron giganteum HOM05D006850 ORTHO05D008545 2.0e-49 200.3 120 66.7
BcaB03g12596 Brassica carinata HOM05D006850 ORTHO05D008545 3.5e-46 189.5 224 45.5
Mapoly0002s0074 Marchantia polymorpha HOM05D006850 ORTHO05D008545 1.9e-39 167.2 166 48.2
Pp3c15_13470 Physcomitrium patens HOM05D006850 ORTHO05D008545 3.7e-35 152.9 128 51.6
Pp3c9_17190 Physcomitrium patens HOM05D006850 ORTHO05D008545 1.4e-34 151.0 130 51.5
SMO145G0227 Selaginella moellendorffii HOM05D006850 ORTHO05D008545 5.8e-33 145.6 84 66.7
HPP92_025149 Vanilla planifolia HOM05D006850 ORTHO05D008545 2.3e-29 133.7 81 67.9
CBR_g29725 Chara braunii HOM05D006850 ORTHO05D008545 4.3e-28 129.4 102 51.0
Actinidia13010 Actinidia chinensis HOM05D006850 ORTHO05D008545 1.5e-17 94.4 178 37.6
EL10Ac4g10139 Beta vulgaris HOM05D006850 ORTHO05D008545 9.4e-07 58.5 106 37.7


User provided reference genes

Program Settings