Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 0.0e+00 1316.2 652 100.0
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 0.0e+00 1099.7 656 83.8
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.0e-298 1029.6 652 80.2
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 5.4e-292 1007.3 653 79.0
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 5.4e-292 1007.3 652 78.5
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 7.1e-292 1006.9 650 78.0
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.5e-289 999.2 670 76.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 2.9e-285 984.9 645 77.4
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 2.6e-278 961.8 670 73.7
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 7.1e-276 953.7 661 73.5
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 3.7e-248 861.7 690 64.5
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 4.8e-248 861.3 685 64.5
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.5e-246 856.3 690 64.1
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 3.6e-243 845.1 655 64.6
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 1.7e-240 836.3 654 65.1
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 1.8e-239 832.8 651 66.5
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 9.1e-239 830.5 675 64.0
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 4.5e-238 828.2 672 63.8
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 1.7e-237 826.2 679 63.5
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 2.2e-237 825.9 650 64.5
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 3.8e-237 825.1 676 62.0
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 1.2e-235 820.1 662 64.0
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.7e-235 818.9 649 64.1
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.4e-234 816.6 647 64.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.7e-234 814.3 649 64.3
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 8.8e-234 813.9 671 62.3
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.4e-233 810.8 678 61.4
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.7e-232 809.7 671 63.3
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 8.2e-232 807.4 677 62.0
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 3.1e-231 805.4 672 60.9
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 4.5e-230 801.6 687 60.8
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 5.9e-230 801.2 683 61.5
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 4.2e-228 795.0 657 63.6
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 4.0e-226 788.5 665 62.0
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.6e-225 785.8 648 62.0
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.7e-224 781.9 663 62.0
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 6.3e-224 781.2 663 62.1
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.8e-223 779.6 667 61.6
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.6e-222 775.8 642 62.6
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.6e-222 775.8 673 59.6
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 7.7e-222 774.2 722 58.2
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 7.7e-222 774.2 659 61.8
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 6.5e-221 771.2 673 59.4
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.2e-219 766.9 671 59.6
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 8.0e-219 764.2 661 59.9
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 5.2e-218 761.5 684 58.3
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 1.5e-217 760.0 703 58.3
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.0e-217 759.6 722 57.2
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 2.6e-217 759.2 681 59.3
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.2e-216 756.1 661 60.8
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.8e-215 753.1 670 57.9
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.4e-215 752.7 658 59.9
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.9e-212 743.0 661 59.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.0e-210 735.3 672 57.6
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 4.4e-209 731.9 634 59.5
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 4.9e-208 728.4 654 58.9
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.4e-207 726.9 642 58.6
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 3.1e-207 725.7 564 65.4
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 9.1e-207 724.2 622 60.0
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.2e-206 723.8 645 58.6
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.6e-206 723.4 645 58.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.6e-206 723.4 622 61.1
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.7e-206 722.6 635 58.3
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 7.7e-206 721.1 654 58.1
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 6.6e-205 718.0 655 58.6
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.9e-204 716.5 686 56.9
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 5.6e-204 714.9 657 57.7
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 5.6e-204 714.9 645 57.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 2.1e-203 713.0 656 57.6
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 4.7e-203 711.8 654 57.6
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.8e-202 709.9 653 57.3
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 2.6e-201 706.1 647 58.6
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 3.4e-201 705.7 650 57.5
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 3.7e-200 702.2 658 58.8
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 7.8e-198 694.5 550 62.7
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.1e-196 690.6 661 58.1
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 3.7e-192 675.6 686 53.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.9e-191 673.3 663 55.2
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.9e-191 673.3 651 56.1
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 5.0e-189 665.2 625 55.0
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 3.3e-188 662.5 751 50.1
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 6.2e-187 658.3 660 52.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.1e-186 657.5 633 54.3
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 8.1e-171 604.7 558 58.1
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.1e-163 578.2 419 68.7
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.9e-160 569.7 661 50.7
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 3.3e-156 556.2 443 64.3
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 2.1e-155 553.5 691 46.0
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.8e-154 550.4 624 49.8
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 6.9e-154 548.5 434 64.7
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 3.4e-153 546.2 292 92.1
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 5.8e-153 545.4 431 67.5
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 2.5e-143 513.5 645 46.7
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.5e-142 509.6 399 65.4
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.9e-138 495.4 648 46.0
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 5.5e-127 459.1 465 53.1
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.5e-124 450.3 494 49.2
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 5.9e-113 412.5 466 48.3
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.2e-105 388.3 472 49.4
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.2e-99 367.5 566 40.6
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.5e-96 355.5 261 70.1
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 8.0e-94 349.0 263 69.6
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.9e-88 330.5 254 69.3
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 1.8e-85 321.2 672 33.8
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 6.8e-85 319.3 195 78.5
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 5.9e-81 306.2 390 43.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.4e-77 295.0 356 49.2
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 8.9e-77 292.4 176 81.2
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.6e-76 290.8 188 74.5
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.8e-76 289.7 630 35.1
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 6.2e-70 269.6 319 49.2
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 8.1e-70 269.2 187 72.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 4.0e-69 266.9 264 54.5
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.4e-68 263.8 264 54.2
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 9.8e-68 262.3 183 68.3
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 3.7e-67 260.4 345 44.3
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 3.7e-67 260.4 363 42.1
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 4.6e-65 253.4 150 78.0
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 6.4e-51 206.5 462 32.5
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.4e-50 205.3 130 73.8
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.3e-37 160.2 201 44.8
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.4e-34 152.1 210 43.8
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 3.9e-32 144.1 204 42.6
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.0e-27 129.4 110 55.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 4.2e-26 124.0 151 51.0
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.8e-24 118.6 110 52.7
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 3.1e-21 107.8 218 32.6
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 5.9e-20 103.6 91 52.7
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.3e-16 92.4 110 43.6
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 1.5e-15 89.0 75 53.3
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 2.2e-14 85.1 53 83.0
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.4e-13 82.4 200 32.5
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 4.1e-13 80.9 82 50.0
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 4.5e-12 77.4 63 60.3
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.7e-11 75.5 72 54.2
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 1.5e-07 62.4 60 58.3
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 2.2e-06 58.5 80 35.0


User provided reference genes

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