Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 0.0e+00 1208.0 628 100.0
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 4.3e-312 1074.7 621 90.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 8.1e-269 930.2 621 80.8
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.3e-255 885.6 623 77.7
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.2e-248 863.2 624 74.0
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 3.0e-231 805.4 623 70.8
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 5.7e-230 801.2 623 70.1
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.9e-226 788.9 645 69.9
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.8e-226 788.5 623 69.5
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.7e-224 781.6 599 71.6
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.1e-220 768.8 623 67.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-218 763.1 657 65.6
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 6.5e-218 761.1 635 67.6
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 5.7e-214 748.0 604 66.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-207 725.7 639 62.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.4e-201 704.1 629 63.9
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.9e-193 679.9 635 60.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 8.6e-186 654.4 636 58.3
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.6e-184 650.2 637 58.1
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 7.8e-179 631.3 637 58.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.9e-177 626.7 638 57.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.4e-172 609.8 639 54.8
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.5e-171 605.9 635 54.3
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 4.6e-171 605.5 638 54.5
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.0e-170 602.8 640 53.9
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 3.9e-170 602.4 638 53.4
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.5e-169 599.7 636 55.0
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.3e-169 599.4 637 55.3
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 6.2e-168 595.1 640 55.9
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.9e-165 586.3 635 53.4
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.1e-164 584.3 699 51.1
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.4e-164 583.9 639 53.8
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.5e-161 573.9 639 52.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 2.4e-159 566.6 639 52.7
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 8.9e-159 564.7 633 51.8
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 5.8e-158 562.0 637 52.1
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 7.6e-158 561.6 668 51.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.9e-157 558.9 637 53.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.4e-156 556.6 641 52.9
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.1e-156 555.1 644 51.6
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 9.2e-156 554.7 634 52.5
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.7e-154 550.4 661 49.9
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.9e-154 549.3 638 50.8
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.1e-154 548.9 641 52.6
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.6e-154 548.5 638 50.8
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.5e-153 547.4 638 50.8
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 4.7e-152 542.3 649 49.8
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 9.0e-151 538.1 630 50.3
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 4.4e-150 535.8 638 51.9
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 7.6e-150 535.0 636 50.0
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 7.6e-150 535.0 637 52.1
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.2e-149 533.5 640 52.7
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 2.9e-149 533.1 638 51.3
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 7.1e-148 528.5 646 50.3
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.2e-147 527.7 636 50.9
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.0e-147 525.4 648 48.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.9e-146 522.7 636 49.5
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 3.3e-145 519.6 637 49.1
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 9.6e-145 518.1 640 49.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 8.1e-144 515.0 667 47.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.4e-143 514.2 667 47.2
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 4.0e-143 512.7 641 49.5
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 6.9e-143 511.9 640 49.5
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.9e-141 505.8 645 47.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 5.4e-140 502.3 639 47.9
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.1e-139 500.4 641 47.0
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.3e-138 497.7 637 47.3
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 3.9e-138 496.1 611 48.8
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.5e-137 494.2 637 49.1
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.5e-137 493.4 646 46.1
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 4.3e-137 492.7 639 47.4
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.3e-136 491.1 621 47.7
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.8e-136 489.2 507 55.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 8.1e-136 488.4 637 49.1
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 8.1e-136 488.4 643 48.1
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.1e-135 488.0 635 49.6
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.1e-135 488.0 621 47.7
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 6.4e-133 478.8 638 47.6
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 6.4e-133 478.8 611 49.9
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 8.4e-133 478.4 639 45.5
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.1e-132 478.0 611 46.3
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-132 478.0 648 45.5
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-132 478.0 647 45.4
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 3.5e-131 473.0 617 46.4
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.3e-130 471.1 627 50.2
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.9e-130 469.5 507 54.4
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.5e-129 466.8 636 44.7
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.6e-128 464.2 568 49.6
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 3.7e-128 463.0 639 46.0
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 4.8e-128 462.6 630 45.4
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 4.8e-128 462.6 636 44.2
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 6.2e-128 462.2 613 45.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 6.9e-127 458.8 634 46.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.5e-126 456.1 649 46.2
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 7.6e-126 455.3 660 43.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.9e-124 450.7 662 42.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 5.5e-124 449.1 637 44.1
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.5e-123 446.4 614 46.6
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.5e-123 446.4 637 43.8
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.8e-122 444.1 636 43.4
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 2.3e-122 443.7 636 43.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 6.7e-122 442.2 623 44.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 8.7e-122 441.8 629 46.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 7.4e-121 438.7 630 44.1
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.3e-120 438.0 641 43.4
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.6e-120 437.6 619 45.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.4e-119 434.5 394 59.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 9.0e-119 431.8 639 43.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.6e-118 430.3 604 44.5
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.5e-118 429.5 641 43.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.4e-116 424.5 606 44.7
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 7.2e-116 422.2 640 44.5
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 2.1e-115 420.6 606 44.4
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.1e-115 420.6 608 44.7
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.1e-115 420.6 567 47.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.0e-114 418.3 630 42.4
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 5.1e-114 416.0 606 44.1
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.3e-112 411.4 639 44.0
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 4.1e-111 406.4 611 43.7
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.5e-110 404.4 633 42.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 1.0e-109 401.7 611 42.2
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 2.9e-109 400.2 611 42.1
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.7e-106 389.0 620 42.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.7e-104 384.4 553 44.7
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 3.7e-104 383.3 413 55.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 2.4e-103 380.6 611 41.7
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.5e-102 377.9 636 42.6
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-92 345.1 324 59.6
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.0e-90 337.0 358 54.7
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.8e-85 320.1 495 41.6
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.5e-85 319.3 270 63.7
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-82 312.0 247 68.0
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.0e-82 310.1 379 50.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.4e-79 301.6 396 47.2
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.0e-73 281.2 360 48.9
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.2e-70 271.9 384 45.8
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 9.5e-68 262.3 278 54.7
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.2e-67 261.9 433 36.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 6.1e-67 259.6 254 57.9
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 8.3e-64 249.2 259 56.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.4e-63 248.4 417 42.0
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.1e-63 246.9 441 36.7
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 8.6e-61 239.2 205 60.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.5e-60 238.4 574 33.3
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 7.3e-60 236.1 668 31.7
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 1.1e-58 232.3 239 51.9
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.4e-57 227.3 492 35.2
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 4.4e-57 226.9 244 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.1e-55 222.2 381 37.0
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.3e-45 188.0 260 46.9
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.5e-44 184.5 324 38.9
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.7e-43 180.3 185 55.1
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-41 175.6 232 47.4
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 9.9e-41 172.6 258 45.3
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-38 164.9 195 51.3
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.7e-38 164.5 180 53.9
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.4e-34 152.1 582 29.6
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 9.0e-34 149.4 95 78.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.6e-30 137.1 135 51.9
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-29 135.6 181 47.5
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 7.3e-28 129.8 190 45.8
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.6e-25 119.8 220 37.7
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 4.6e-22 110.5 265 33.2
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.0e-21 109.4 202 38.1
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-19 102.4 253 32.8
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.6e-17 94.7 260 31.9
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 6.5e-16 90.1 89 55.1
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.5e-12 79.0 73 47.9
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.8e-11 74.7 97 43.3
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 4.5e-09 67.4 90 44.4


User provided reference genes

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