Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G134401 Glycine max HOM05D002000 ORTHO05D002027 3.9e-69 264.6 129 100.0
Glyma.03G132300 Glycine max HOM05D002000 ORTHO05D002027 2.6e-28 129.0 107 66.4
VMungo1383G2209 Vigna mungo HOM05D002000 ORTHO05D002027 3.7e-19 98.6 79 70.9
Medtr7g090740 Medicago truncatula HOM05D002000 ORTHO05D002027 3.5e-17 92.0 109 50.5
Potri.016G041900 Populus trichocarpa HOM05D002000 ORTHO05D002027 1.0e-16 90.5 91 53.8
MELO3C009822.2 Cucumis melo HOM05D002000 ORTHO05D002027 1.7e-16 89.7 90 53.3
CsaV3_3G040870 Cucumis sativus L. HOM05D002000 ORTHO05D002027 1.7e-16 89.7 90 53.3
Sabra16G0047600 Salix brachista HOM05D002000 ORTHO05D002027 2.3e-16 89.4 91 53.8
TPR.G32751 Trifolium pratense HOM05D002000 ORTHO05D002027 6.6e-16 87.8 91 54.9
Ca_08426_v3 Cicer arietinum L. HOM05D002000 ORTHO05D002027 8.6e-16 87.4 63 69.8
Actinidia17678 Actinidia chinensis HOM05D002000 ORTHO05D002027 1.5e-15 86.7 58 69.0
RcHm_v2.0_Chr3g0484541 Rosa chinensis HOM05D002000 ORTHO05D002027 3.3e-15 85.5 110 49.1
TAR636G1876 Trochodendron aralioides HOM05D002000 ORTHO05D002027 3.3e-15 85.5 64 64.1
Manes.09G016100 Manihot esculenta HOM05D002000 ORTHO05D002027 5.6e-15 84.7 69 62.3
MELO3C011732.2 Cucumis melo HOM05D002000 ORTHO05D002027 7.3e-15 84.3 76 61.8
MD12G1085800 Malus domestica HOM05D002000 ORTHO05D002027 7.3e-15 84.3 82 54.9
Atru.chr1.1241 Acer truncatum HOM05D002000 ORTHO05D002027 1.2e-14 83.6 108 50.0
ClCG02G013930 Citrullus lanatus HOM05D002000 ORTHO05D002027 1.2e-14 83.6 76 61.8
Phvul.001G128300 Phaseolus vulgaris HOM05D002000 ORTHO05D002027 1.2e-14 83.6 77 58.4
TAR633G1029 Trochodendron aralioides HOM05D002000 ORTHO05D002027 1.2e-14 83.6 64 60.9
Actinidia38143 Actinidia chinensis HOM05D002000 ORTHO05D002027 2.1e-14 82.8 83 53.0
CsaV3_5G006220 Cucumis sativus L. HOM05D002000 ORTHO05D002027 2.1e-14 82.8 75 61.3
Sed0011530 Sechium edule HOM05D002000 ORTHO05D002027 2.1e-14 82.8 76 61.8
Nn3g19988 Nelumbo nucifera HOM05D002000 ORTHO05D002027 2.8e-14 82.4 75 54.7
Sed0019396 Sechium edule HOM05D002000 ORTHO05D002027 3.6e-14 82.0 59 66.1
Sc11g0006770 Simmondsia chinensis HOM05D002000 ORTHO05D002027 6.2e-14 81.3 54 68.5
AL5G38690 Arabidopsis lyrata HOM05D002000 ORTHO05D002027 1.1e-13 80.5 92 53.3
MD14G1080900 Malus domestica HOM05D002000 ORTHO05D002027 1.1e-13 80.5 49 77.6
Nn1g07876 Nelumbo nucifera HOM05D002000 ORTHO05D002027 1.1e-13 80.5 75 53.3
Prupe.7G049900 Prunus persica HOM05D002000 ORTHO05D002027 1.1e-13 80.5 45 80.0
TAR369G1070 Trochodendron aralioides HOM05D002000 ORTHO05D002027 1.1e-13 80.5 60 60.0
TAR383G0681 Trochodendron aralioides HOM05D002000 ORTHO05D002027 1.1e-13 80.5 60 60.0
Duzib106G0022 Durio zibethinus HOM05D002000 ORTHO05D002027 1.4e-13 80.1 62 66.1
QL07p005014 Quercus lobata HOM05D002000 ORTHO05D002027 1.4e-13 80.1 60 65.0
BcaNung06570 Brassica carinata HOM05D002000 ORTHO05D002027 1.8e-13 79.7 96 51.0
Dinv18688 Davidia involucrata HOM05D002000 ORTHO05D002027 1.8e-13 79.7 64 64.1
Dinv30295 Davidia involucrata HOM05D002000 ORTHO05D002027 3.1e-13 79.0 60 65.0
FvH4_6g24880 Fragaria vesca HOM05D002000 ORTHO05D002027 4.0e-13 78.6 62 69.4
QL04p013160 Quercus lobata HOM05D002000 ORTHO05D002027 4.0e-13 78.6 84 57.1
ClCG10G015560 Citrullus lanatus HOM05D002000 ORTHO05D002027 5.2e-13 78.2 80 51.2
Haze_19752 Corylus avellana HOM05D002000 ORTHO05D002027 5.2e-13 78.2 84 53.6
C08p32510 Brassica napus HOM05D002000 ORTHO05D002027 6.8e-13 77.8 94 51.1
BolC8t50866H Brassica oleracea HOM05D002000 ORTHO05D002027 6.8e-13 77.8 94 51.1
CANSAT80G1077 Cannabis sativa HOM05D002000 ORTHO05D002027 6.8e-13 77.8 48 75.0
MBI13_g04785_MAGBIO Magnolia biondii HOM05D002000 ORTHO05D002027 6.8e-13 77.8 94 50.0
Psat3g075240 Pisum sativum HOM05D002000 ORTHO05D002027 8.9e-13 77.4 109 45.0
Oeu014603.1 Olea europaea HOM05D002000 ORTHO05D002027 1.2e-12 77.0 89 52.8
AT3G57200 Arabidopsis thaliana HOM05D002000 ORTHO05D002027 1.5e-12 76.6 91 51.6
DCAR_020538 Daucus carota HOM05D002000 ORTHO05D002027 1.5e-12 76.6 74 56.8
Sp5g05370 Schrenkiella parvula HOM05D002000 ORTHO05D002027 1.5e-12 76.6 54 70.4
SGA_v2.0_scaffold119G32789 Striga asiatica HOM05D002000 ORTHO05D002027 1.5e-12 76.6 93 52.7
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 1.5e-12 76.6 67 58.2
FAN05G1974 Fragaria x ananassa HOM05D002000 ORTHO05D002027 2.0e-12 76.3 62 66.1
Cpa.g.sc120.11 Carica papaya HOM05D002000 ORTHO05D002027 2.6e-12 75.9 91 49.5
Migut.B01197 Erythranthe guttata HOM05D002000 ORTHO05D002027 4.4e-12 75.1 87 51.7
FAN14G5479 Fragaria x ananassa HOM05D002000 ORTHO05D002027 4.4e-12 75.1 59 69.5
CiPaw.14G005300 Carya illinoinensis HOM05D002000 ORTHO05D002027 5.8e-12 74.7 82 53.7
PGR031G1636 Punica granatum HOM05D002000 ORTHO05D002027 5.8e-12 74.7 76 56.6
MSTRG.20543 Avicennia marina HOM05D002000 ORTHO05D002027 7.5e-12 74.3 86 51.2
CDE08G0996 Ceratophyllum demersum HOM05D002000 ORTHO05D002027 7.5e-12 74.3 69 55.1
Rhsim04G0108000 Rhododendron simsii HOM05D002000 ORTHO05D002027 7.5e-12 74.3 76 55.3
PSO339G6593 Papaver somniferum HOM05D002000 ORTHO05D002027 1.3e-11 73.6 64 64.1
TWI53G1821 Tripterygium wilfordii HOM05D002000 ORTHO05D002027 1.3e-11 73.6 66 59.1
arahy.Tifrunner.gnm1.ann1.7Q1XW7 Arachis hypogaea HOM05D002000 ORTHO05D002027 1.7e-11 73.2 82 51.2
arahy.Tifrunner.gnm1.ann1.ZWX2MJ Arachis hypogaea HOM05D002000 ORTHO05D002027 1.7e-11 73.2 82 51.2
Aqoxy2G00264 Aquilegia oxysepala HOM05D002000 ORTHO05D002027 2.2e-11 72.8 52 71.2
Thhalv10006445m.g Eutrema salsugineum HOM05D002000 ORTHO05D002027 2.2e-11 72.8 86 48.8
Lalb_Chr25g0287061 Lupinus albus HOM05D002000 ORTHO05D002027 2.2e-11 72.8 76 53.9
PSO384G4788 Papaver somniferum HOM05D002000 ORTHO05D002027 2.2e-11 72.8 64 64.1
Peaxi162Scf00071g00940 Petunia axillaris HOM05D002000 ORTHO05D002027 2.2e-11 72.8 84 53.6
PGR004G1746 Punica granatum HOM05D002000 ORTHO05D002027 2.2e-11 72.8 67 58.2
DCAR_031821 Daucus carota HOM05D002000 ORTHO05D002027 3.7e-11 72.0 63 60.3
SEGI_41320 Sequoiadendron giganteum HOM05D002000 ORTHO05D002027 3.7e-11 72.0 87 50.6
Actinidia06275 Actinidia chinensis HOM05D002000 ORTHO05D002027 4.9e-11 71.6 85 49.4
CSS0030968 Camellia sinensis var. sinensis HOM05D002000 ORTHO05D002027 4.9e-11 71.6 72 51.4
ATR0057G025 Amborella trichopoda HOM05D002000 ORTHO05D002027 6.4e-11 71.2 74 51.4
Lsat_1_v5_gn_1_100380 Lactuca sativa HOM05D002000 ORTHO05D002027 6.4e-11 71.2 84 45.2
PSO384G3800 Papaver somniferum HOM05D002000 ORTHO05D002027 6.4e-11 71.2 83 53.0
GSVIVG01000861001 Vitis vinifera HOM05D002000 ORTHO05D002027 6.4e-11 71.2 76 50.0
Thhalv10007378m.g Eutrema salsugineum HOM05D002000 ORTHO05D002027 8.3e-11 70.9 85 49.4
FAN03G0213 Fragaria x ananassa HOM05D002000 ORTHO05D002027 8.3e-11 70.9 63 55.6
FAN10G1593 Fragaria x ananassa HOM05D002000 ORTHO05D002027 8.3e-11 70.9 63 55.6
Gohir.D11G324700 Gossypium hirsutum HOM05D002000 ORTHO05D002027 8.3e-11 70.9 55 65.5
Gorai.007G355500 Gossypium raimondii HOM05D002000 ORTHO05D002027 8.3e-11 70.9 55 65.5
FvH4_7g02090 Fragaria vesca HOM05D002000 ORTHO05D002027 1.4e-10 70.1 57 59.6
HanXRQChr10g0298651 Helianthus annuus HOM05D002000 ORTHO05D002027 1.4e-10 70.1 92 44.6
RcHm_v2.0_Chr1g0319411 Rosa chinensis HOM05D002000 ORTHO05D002027 1.4e-10 70.1 105 43.8
SalBow5G4462 Salvia bowleyana HOM05D002000 ORTHO05D002027 1.4e-10 70.1 69 55.1
Thecc.K0006500 Theobroma cacao HOM05D002000 ORTHO05D002027 1.4e-10 70.1 41 73.2
CiPaw.10G036700 Carya illinoinensis HOM05D002000 ORTHO05D002027 2.4e-10 69.3 87 48.3
AUR62026810 Chenopodium quinoa HOM05D002000 ORTHO05D002027 2.4e-10 69.3 49 65.3
AUR62037243 Chenopodium quinoa HOM05D002000 ORTHO05D002027 2.4e-10 69.3 49 65.3
Haze_03107 Corylus avellana HOM05D002000 ORTHO05D002027 2.4e-10 69.3 66 60.6
Lsat_1_v5_gn_9_31980 Lactuca sativa HOM05D002000 ORTHO05D002027 2.4e-10 69.3 113 40.7
PSO339G5901 Papaver somniferum HOM05D002000 ORTHO05D002027 2.4e-10 69.3 83 53.0
CANSAT80G0142 Cannabis sativa HOM05D002000 ORTHO05D002027 3.2e-10 68.9 55 63.6
vmacro09043 Vaccinium macrocarpon HOM05D002000 ORTHO05D002027 3.2e-10 68.9 54 64.8
FAN01G1457 Fragaria x ananassa HOM05D002000 ORTHO05D002027 4.1e-10 68.6 69 55.1
A09p50140 Brassica napus HOM05D002000 ORTHO05D002027 5.4e-10 68.2 57 59.6
BraA09t40466Z Brassica rapa HOM05D002000 ORTHO05D002027 5.4e-10 68.2 57 59.6
Aa31LG10G12110 Aethionema arabicum HOM05D002000 ORTHO05D002027 7.0e-10 67.8 75 53.3
AL4G39530 Arabidopsis lyrata HOM05D002000 ORTHO05D002027 7.0e-10 67.8 78 50.0
Lj3g0013780 Lotus japonicus HOM05D002000 ORTHO05D002027 7.0e-10 67.8 61 57.4
SHI24585 Sapria himalayana HOM05D002000 ORTHO05D002027 7.0e-10 67.8 59 57.6
Carub.0005s2402 Capsella rubella HOM05D002000 ORTHO05D002027 9.2e-10 67.4 85 44.7
FAN06G2265 Fragaria x ananassa HOM05D002000 ORTHO05D002027 9.2e-10 67.4 57 57.9
Manes.04G163600 Manihot esculenta HOM05D002000 ORTHO05D002027 9.2e-10 67.4 90 47.8
Cc09_g07770 Coffea canephora HOM05D002000 ORTHO05D002027 1.2e-09 67.0 95 48.4
Thhalv10017666m.g Eutrema salsugineum HOM05D002000 ORTHO05D002027 1.2e-09 67.0 58 56.9
Gohir.A11G309300 Gossypium hirsutum HOM05D002000 ORTHO05D002027 1.2e-09 67.0 55 63.6
Gorai.012G080800 Gossypium raimondii HOM05D002000 ORTHO05D002027 1.2e-09 67.0 84 51.2
Ah.10g030930 Amaranthus hybridus HOM05D002000 ORTHO05D002027 1.6e-09 66.6 59 55.9
Dinv03573 Davidia involucrata HOM05D002000 ORTHO05D002027 1.6e-09 66.6 81 49.4
Gohir.D04G071700 Gossypium hirsutum HOM05D002000 ORTHO05D002027 1.6e-09 66.6 84 51.2
EL10Ac2g02874 Beta vulgaris HOM05D002000 ORTHO05D002027 2.0e-09 66.2 45 66.7
BcaC07g40065 Brassica carinata HOM05D002000 ORTHO05D002027 2.0e-09 66.2 48 66.7
Ciclev10004681m.g Citrus clementina HOM05D002000 ORTHO05D002027 2.0e-09 66.2 80 48.8
HanXRQChr01g0020851 Helianthus annuus HOM05D002000 ORTHO05D002027 2.0e-09 66.2 71 49.3
Glyma.11G149700 Glycine max HOM05D002000 ORTHO05D002027 2.7e-09 65.9 85 43.5
AT2G41451 Arabidopsis thaliana HOM05D002000 ORTHO05D002027 3.5e-09 65.5 59 59.3
Glyma.04G141900 Glycine max HOM05D002000 ORTHO05D002027 3.5e-09 65.5 65 52.3
TPR.G2748 Trifolium pratense HOM05D002000 ORTHO05D002027 3.5e-09 65.5 64 54.7
vmacro12685 Vaccinium macrocarpon HOM05D002000 ORTHO05D002027 3.5e-09 65.5 73 53.4
Hund15705 Selenicereus undatus HOM05D002000 ORTHO05D002027 4.6e-09 65.1 44 65.9
Carub.0004s2375 Capsella rubella HOM05D002000 ORTHO05D002027 6.0e-09 64.7 58 55.2
Peaxi162Scf00087g00130 Petunia axillaris HOM05D002000 ORTHO05D002027 6.0e-09 64.7 60 56.7
Nitab4.5_0001543g0010 Nicotiana tabacum HOM05D002000 ORTHO05D002027 7.8e-09 64.3 60 55.0
Oeu009630.1 Olea europaea HOM05D002000 ORTHO05D002027 7.8e-09 64.3 94 47.9
Sp4g23720 Schrenkiella parvula HOM05D002000 ORTHO05D002027 7.8e-09 64.3 74 45.9
Lalb_Chr25g0282741 Lupinus albus HOM05D002000 ORTHO05D002027 1.0e-08 63.9 57 54.4
Nitab4.5_0000082g0360 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.0e-08 63.9 51 62.7
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.0e-08 63.9 60 55.0
TWI38G0983 Tripterygium wilfordii HOM05D002000 ORTHO05D002027 1.0e-08 63.9 75 54.7
Lalb_Chr01g0017201 Lupinus albus HOM05D002000 ORTHO05D002027 1.3e-08 63.5 45 64.4
Lj1g0001796 Lotus japonicus HOM05D002000 ORTHO05D002027 1.7e-08 63.2 35 80.0
Gorai.002G227500 Gossypium raimondii HOM05D002000 ORTHO05D002027 2.3e-08 62.8 66 54.5
Potri.003G202900 Populus trichocarpa HOM05D002000 ORTHO05D002027 3.0e-08 62.4 75 49.3
MD07G1027100 Malus domestica HOM05D002000 ORTHO05D002027 3.9e-08 62.0 57 59.6
Peaxi162Scf00002g03611 Petunia axillaris HOM05D002000 ORTHO05D002027 3.9e-08 62.0 53 52.8
Prupe.2G027600 Prunus persica HOM05D002000 ORTHO05D002027 3.9e-08 62.0 56 58.9
Gohir.A01G193750 Gossypium hirsutum HOM05D002000 ORTHO05D002027 5.0e-08 61.6 66 53.0
Gohir.D01G184000 Gossypium hirsutum HOM05D002000 ORTHO05D002027 5.0e-08 61.6 66 53.0
Lsat_1_v5_gn_5_160741 Lactuca sativa HOM05D002000 ORTHO05D002027 5.0e-08 61.6 52 59.6
Manes.08G053500 Manihot esculenta HOM05D002000 ORTHO05D002027 5.0e-08 61.6 62 51.6
VMungo1080G0446 Vigna mungo HOM05D002000 ORTHO05D002027 5.0e-08 61.6 57 57.9
arahy.Tifrunner.gnm1.ann1.IF4HA9 Arachis hypogaea HOM05D002000 ORTHO05D002027 6.6e-08 61.2 63 55.6
arahy.Tifrunner.gnm1.ann1.LRH7VZ Arachis hypogaea HOM05D002000 ORTHO05D002027 6.6e-08 61.2 63 55.6
Medtr3g023150 Medicago truncatula HOM05D002000 ORTHO05D002027 6.6e-08 61.2 90 42.2
Nitab4.5_0001249g0050 Nicotiana tabacum HOM05D002000 ORTHO05D002027 6.6e-08 61.2 46 65.2
HPP92_023823 Vanilla planifolia HOM05D002000 ORTHO05D002027 6.6e-08 61.2 45 62.2
HPP92_023898 Vanilla planifolia HOM05D002000 ORTHO05D002027 6.6e-08 61.2 45 62.2
MD02G1296800 Malus domestica HOM05D002000 ORTHO05D002027 8.6e-08 60.8 57 54.4
Phvul.005G033300 Phaseolus vulgaris HOM05D002000 ORTHO05D002027 8.6e-08 60.8 57 56.1
Potri.001G022700 Populus trichocarpa HOM05D002000 ORTHO05D002027 1.1e-07 60.5 75 49.3
Rhsim01G0123200 Rhododendron simsii HOM05D002000 ORTHO05D002027 1.5e-07 60.1 54 61.1
Ca_30823_v3 Cicer arietinum L. HOM05D002000 ORTHO05D002027 2.5e-07 59.3 62 51.6
Oeu027348.1 Olea europaea HOM05D002000 ORTHO05D002027 2.5e-07 59.3 60 53.3
TWI74G1311 Tripterygium wilfordii HOM05D002000 ORTHO05D002027 3.3e-07 58.9 32 75.0
Gohir.A05G334350 Gossypium hirsutum HOM05D002000 ORTHO05D002027 4.3e-07 58.5 84 46.4
Solyc01g068200.4 Solanum lycopersicum HOM05D002000 ORTHO05D002027 4.3e-07 58.5 59 52.5
Sopen01g030140 Solanum pennellii HOM05D002000 ORTHO05D002027 4.3e-07 58.5 59 52.5
EL10Ac3g07164 Beta vulgaris HOM05D002000 ORTHO05D002027 7.3e-07 57.8 59 47.5
HanXRQChr13g0396081 Helianthus annuus HOM05D002000 ORTHO05D002027 9.5e-07 57.4 80 51.2
HPP92_008134 Vanilla planifolia HOM05D002000 ORTHO05D002027 9.5e-07 57.4 83 44.6
PGSC0003DMG400006752 Solanum tuberosum HOM05D002000 ORTHO05D002027 1.2e-06 57.0 59 50.8
THA.LOC104826710 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 1.2e-06 57.0 75 48.0
Cc06_g18380 Coffea canephora HOM05D002000 ORTHO05D002027 1.6e-06 56.6 62 46.8
Cpa.g.sc197.16 Carica papaya HOM05D002000 ORTHO05D002027 4.7e-06 55.1 93 45.2
AUR62030398 Chenopodium quinoa HOM05D002000 ORTHO05D002027 4.7e-06 55.1 75 48.0
ECA247G1452 Erigeron canadensis HOM05D002000 ORTHO05D002424 4.7e-06 55.1 74 45.9
Lj1A1122G43 Lonicera japonica HOM05D002000 ORTHO05D002027 4.7e-06 55.1 41 61.0
SMO116G0268 Selaginella moellendorffii HOM05D002000 ORTHO05D002027 4.7e-06 55.1 48 58.3
unitig_0.g1388 Utricularia gibba HOM05D002000 ORTHO05D002027 6.2e-06 54.7 53 52.8


User provided reference genes

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