Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 6.0e-98 360.9 193 100.0
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.3e-79 300.1 200 87.5
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.7e-66 255.8 184 78.8
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.2e-61 240.4 186 76.3
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.2e-53 213.8 184 69.0
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 7.7e-53 211.1 192 65.6
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.7e-50 202.6 191 66.0
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.4e-46 189.5 181 62.4
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 1.5e-43 180.3 186 58.1
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 7.2e-43 177.9 182 57.7
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 6.8e-41 171.4 186 54.3
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.6e-40 169.5 181 58.6
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.8e-39 166.0 187 51.9
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 4.9e-39 165.2 191 55.5
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 6.3e-39 164.9 181 57.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 8.3e-39 164.5 202 50.5
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.8e-38 163.3 181 56.9
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.4e-38 162.9 186 52.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.4e-38 162.9 185 54.1
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 4.1e-38 162.2 184 54.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 5.4e-38 161.8 180 52.8
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 5.4e-38 161.8 190 55.3
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.6e-37 160.2 189 53.4
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.7e-37 159.5 183 51.9
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.5e-37 158.7 189 52.9
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 5.9e-37 158.3 179 53.6
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.0e-36 157.5 178 53.9
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.3e-36 157.1 183 54.1
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.7e-36 156.8 180 51.7
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.7e-36 156.8 184 52.2
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 2.3e-36 156.4 183 49.7
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.1e-35 154.1 175 54.3
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.5e-35 153.7 189 49.7
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.9e-35 153.3 186 52.2
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.9e-35 153.3 187 51.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.9e-35 153.3 187 51.9
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 2.5e-35 152.9 187 49.7
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 5.5e-35 151.8 190 52.6
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.6e-34 150.2 177 52.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.6e-34 150.2 188 50.0
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 2.1e-34 149.8 178 52.2
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.1e-34 149.8 183 51.4
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.6e-34 149.1 184 51.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 3.6e-34 149.1 179 51.4
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 8.0e-34 147.9 186 51.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 8.0e-34 147.9 180 50.6
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 8.0e-34 147.9 181 50.3
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 8.0e-34 147.9 190 46.8
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.8e-33 146.7 188 52.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 1.8e-33 146.7 190 51.1
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 4.0e-33 145.6 180 52.8
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.8e-33 144.8 177 52.0
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.6e-32 142.9 205 45.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.6e-32 142.9 173 52.6
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 9.8e-32 141.0 179 47.5
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.8e-31 139.4 179 46.9
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 3.7e-31 139.0 182 47.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.7e-31 139.0 177 49.2
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 4.9e-31 138.7 192 45.3
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-30 137.1 186 48.9
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.8e-30 136.7 187 46.0
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.8e-30 136.7 187 47.1
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.1e-30 135.6 190 50.0
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 7.8e-29 131.3 187 48.7
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 7.8e-29 131.3 179 45.8
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.3e-28 130.6 174 47.1
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 2.3e-28 129.8 183 43.7
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.9e-28 129.4 174 47.7
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 5.0e-28 128.6 187 44.9
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.0e-28 128.6 172 48.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 5.0e-28 128.6 179 48.6
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.1e-27 127.5 189 47.1
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.5e-27 126.3 177 46.9
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 4.3e-27 125.6 156 50.6
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.8e-26 122.9 188 44.1
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.8e-26 122.9 181 45.3
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 3.6e-26 122.5 164 49.4
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 4.7e-26 122.1 180 41.1
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 6.1e-26 121.7 199 41.7
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-25 120.6 186 44.1
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.4e-25 120.6 165 48.5
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.4e-25 120.6 178 44.9
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.8e-25 120.2 186 44.6
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 4.0e-25 119.0 190 41.1
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 4.0e-25 119.0 189 46.0
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 6.8e-25 118.2 181 42.5
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.6e-24 116.3 180 43.3
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.6e-24 116.3 190 42.1
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.4e-24 115.9 178 43.3
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.4e-24 115.9 178 43.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.4e-24 115.9 178 43.3
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 4.4e-24 115.5 181 42.0
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 4.4e-24 115.5 181 42.0
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.4e-24 115.5 181 44.2
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 5.8e-24 115.2 180 42.8
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.8e-24 115.2 181 43.1
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.5e-24 114.8 181 43.1
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 9.8e-24 114.4 175 45.1
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 9.8e-24 114.4 178 43.3
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 9.8e-24 114.4 178 43.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.7e-23 113.6 177 41.8
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 2.9e-23 112.8 178 42.1
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-23 112.8 178 42.1
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-23 112.8 178 42.1
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.9e-23 112.8 178 42.1
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.9e-23 112.1 174 43.7
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 6.4e-23 111.7 178 41.6
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 8.3e-23 111.3 154 47.4
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.4e-22 109.8 171 43.9
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.1e-22 109.0 154 50.0
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.1e-22 109.0 154 50.0
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 7.0e-22 108.2 158 44.3
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.2e-22 107.8 188 40.4
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 3.5e-21 105.9 180 41.7
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 4.6e-21 105.5 179 41.3
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 6.0e-21 105.1 158 41.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 7.8e-21 104.8 171 42.1
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.6e-20 101.3 173 45.1
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.9e-19 100.1 154 42.9
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 3.3e-19 99.4 146 43.2
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 3.3e-19 99.4 162 46.3
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.2e-18 97.4 161 39.8
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.6e-18 97.1 161 41.6
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.8e-18 96.3 175 42.9
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.6e-18 95.9 169 37.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 8.1e-18 94.7 80 63.8
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.1e-17 94.4 171 43.3
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.1e-17 94.4 165 41.8
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.8e-17 93.6 76 69.7
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 2.3e-17 93.2 177 40.7
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-16 90.5 177 39.5
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.5e-16 90.5 177 39.5
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 2.0e-16 90.1 175 37.7
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.4e-16 89.4 179 38.0
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 4.4e-16 89.0 166 36.7
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 5.8e-16 88.6 177 37.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 5.8e-16 88.6 177 37.9
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 7.5e-16 88.2 173 41.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-15 86.3 177 37.3
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 6.4e-15 85.1 187 34.8
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 3.9e-12 75.9 198 32.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.1e-11 74.3 192 32.8
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 1.1e-11 74.3 59 64.4
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.5e-11 73.9 175 35.4
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-10 70.9 129 40.3
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.6e-10 70.5 88 47.7
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.8e-10 69.7 183 31.7
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.4e-09 67.4 201 30.3
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.2e-09 65.5 146 37.7
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 5.2e-09 65.5 56 58.9
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 8.9e-09 64.7 211 28.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 5.8e-08 62.0 175 32.6
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 7.6e-08 61.6 180 32.8
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 1.7e-07 60.5 185 30.3
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.9e-07 58.9 193 29.0
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 2.4e-06 56.6 165 29.7
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 2.4e-06 56.6 172 29.1
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 3.2e-06 56.2 173 27.7
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 5.4e-06 55.5 169 29.6


User provided reference genes

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