Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 4.5e-255 884.0 422 100.0
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.8e-243 845.5 422 94.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 9.4e-237 823.2 422 91.7
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 3.6e-236 821.2 422 91.2
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 1.3e-230 802.7 422 88.2
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.8e-227 792.3 420 87.6
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.6e-226 788.5 422 85.5
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 4.4e-226 787.7 422 85.1
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 5.7e-226 787.3 422 85.8
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.3e-225 786.2 419 86.6
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 5.0e-222 774.2 419 85.2
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 2.5e-221 771.9 419 85.0
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.7e-210 734.2 416 79.8
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.2e-209 732.3 416 78.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 8.3e-209 730.3 416 78.8
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 8.3e-209 730.3 419 77.3
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.8e-208 729.2 416 78.4
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.6e-207 726.1 417 77.9
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 7.7e-207 723.8 419 77.8
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 7.7e-207 723.8 416 78.6
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.0e-206 723.4 419 77.1
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-206 723.0 415 77.6
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 5.0e-206 721.1 418 78.0
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 8.6e-206 720.3 415 77.8
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.1e-205 719.9 417 77.7
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.5e-205 718.8 416 76.9
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 7.2e-205 717.2 416 76.9
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 9.5e-205 716.8 419 77.8
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.1e-204 715.7 415 76.9
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 2.8e-204 715.3 419 77.3
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.8e-204 715.3 416 76.7
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 3.6e-204 714.9 422 76.5
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.7e-204 714.5 415 77.3
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 6.1e-204 714.1 419 76.8
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 8.0e-204 713.8 422 75.1
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 8.0e-204 713.8 416 76.9
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.0e-203 713.4 415 76.4
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.8e-203 712.6 416 77.9
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.8e-203 712.6 417 77.9
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 2.3e-203 712.2 416 77.2
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.2e-203 711.1 415 76.1
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 6.8e-203 710.7 417 77.5
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 8.8e-203 710.3 422 74.4
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 2.0e-202 709.1 416 75.5
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 2.6e-202 708.8 417 75.1
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.6e-202 708.8 419 77.1
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 4.4e-202 708.0 420 76.0
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 9.8e-202 706.8 422 74.2
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 9.8e-202 706.8 418 76.6
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.7e-201 706.1 422 73.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.7e-201 706.1 416 76.0
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 2.2e-201 705.7 423 74.0
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.8e-201 705.3 415 75.9
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.8e-201 705.3 416 75.5
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 6.3e-201 704.1 422 73.5
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 2.4e-200 702.2 422 74.4
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 3.1e-200 701.8 422 73.5
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 7.0e-200 700.7 417 76.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.2e-199 699.9 422 73.5
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.0e-199 699.1 419 75.4
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 4.5e-199 698.0 411 75.9
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 5.9e-199 697.6 415 76.1
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 7.8e-199 697.2 416 75.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 7.8e-199 697.2 416 74.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.7e-198 696.0 443 72.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 3.8e-198 694.9 415 74.0
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.8e-198 694.9 443 72.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 8.6e-198 693.7 416 75.7
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.5e-197 693.0 421 74.3
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.5e-197 693.0 458 70.3
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.3e-197 691.8 415 74.5
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.3e-197 691.8 417 74.8
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.8e-196 688.7 420 73.3
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 6.1e-196 687.6 420 73.6
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 6.1e-196 687.6 417 74.3
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.8e-195 686.0 449 70.2
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 4.0e-195 684.9 418 75.4
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.8e-195 684.1 415 74.0
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 2.6e-194 682.2 421 72.2
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.4e-194 681.8 415 74.0
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.7e-194 681.0 415 74.0
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 2.9e-193 678.7 425 73.6
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.1e-192 676.8 405 74.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 5.4e-192 674.5 405 74.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 9.2e-192 673.7 404 74.5
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.2e-191 673.3 395 77.0
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 5.9e-191 671.0 404 74.0
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 1.9e-189 666.0 417 72.4
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.3e-189 664.1 501 62.9
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 1.2e-188 663.3 398 74.4
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.4e-187 659.8 423 71.6
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.0e-187 658.3 424 71.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.5e-186 656.4 416 70.9
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 1.5e-186 656.4 402 75.1
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 4.4e-186 654.8 422 70.1
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 4.4e-186 654.8 416 71.2
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 4.9e-185 651.4 453 66.0
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.9e-184 649.4 429 69.2
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.9e-184 649.4 422 69.7
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 5.4e-184 647.9 418 70.1
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 7.0e-184 647.5 435 69.7
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 7.8e-183 644.0 410 70.7
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.3e-182 643.3 395 74.2
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 3.3e-181 638.6 459 65.8
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 8.3e-177 624.0 428 66.6
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 8.3e-177 624.0 405 70.4
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 3.4e-170 602.1 419 66.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 9.9e-170 600.5 415 66.7
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.2e-169 599.4 398 70.4
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 5.8e-162 574.7 417 64.5
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 8.4e-161 570.9 420 63.6
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 3.9e-158 562.0 416 65.1
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 9.6e-157 557.4 419 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.8e-155 553.1 419 61.6
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 4.0e-155 552.0 358 70.1
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 1.3e-153 547.0 371 67.9
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 1.1e-149 533.9 301 77.7
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.6e-148 530.0 415 62.7
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 4.0e-147 525.4 437 59.5
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 6.0e-143 511.5 360 66.1
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.4e-131 473.0 421 52.5
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 2.4e-131 473.0 332 66.9
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 2.8e-124 449.5 465 52.0
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 3.7e-124 449.1 462 52.2
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.8e-123 446.8 473 48.2
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 5.7e-117 425.2 470 45.5
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.5e-104 383.3 426 46.9
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.8e-44 183.3 115 69.6
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 9.6e-32 142.1 93 71.0
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 1.3e-31 141.7 89 73.0
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 1.3e-31 141.7 89 73.0
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.0e-29 134.4 115 55.7
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-28 131.7 100 62.0
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 4.5e-21 106.7 69 72.5
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 1.3e-20 105.1 69 72.5
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 8.4e-20 102.4 69 71.0
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 4.2e-19 100.1 136 41.9
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.2e-18 98.6 69 68.1
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.7e-16 89.7 55 70.9
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.3e-08 63.9 65 49.2
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 6.3e-07 59.7 36 72.2
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.9e-06 56.2 121 31.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 9.1e-06 55.8 121 31.4


User provided reference genes

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