Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 4.2e-123 444.9 253 100.0
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.1e-110 403.7 254 86.2
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 8.7e-97 357.5 253 78.7
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 5.3e-94 348.2 254 78.0
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.6e-64 249.6 270 62.6
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 6.3e-63 245.0 272 60.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.0e-60 237.7 276 59.4
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.2e-60 236.5 269 60.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 7.2e-59 231.5 281 58.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.6e-53 213.8 287 56.1
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 9.5e-43 177.9 191 63.4
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.2e-39 166.8 280 50.0
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 5.4e-38 162.2 293 47.8
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 3.3e-35 152.9 276 47.1
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 4.0e-33 146.0 290 45.9
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.2e-33 145.6 299 44.8
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.0e-32 143.7 302 42.4
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.4e-32 142.9 321 39.9
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 4.4e-32 142.5 298 44.6
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.8e-32 142.1 305 43.0
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.7e-31 140.6 299 44.8
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.9e-31 139.0 232 46.1
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.9e-30 137.1 281 43.8
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.0e-29 133.7 284 43.3
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.0e-29 133.7 284 43.3
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 3.5e-29 132.9 235 45.1
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.3e-28 131.0 275 42.9
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.9e-28 129.4 283 41.3
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.5e-27 127.5 312 40.1
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 4.3e-27 125.9 322 39.8
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 5.6e-27 125.6 291 38.8
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.1e-26 123.6 301 42.2
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.6e-26 122.9 315 40.3
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.1e-26 121.7 324 39.2
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-25 121.3 314 40.4
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.4e-25 120.9 311 41.5
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 5.2e-25 119.0 274 40.1
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 6.8e-25 118.6 279 41.6
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 6.8e-25 118.6 327 37.9
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 5.8e-24 115.5 327 37.6
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.8e-24 115.5 251 41.8
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.5e-24 115.2 301 41.2
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 7.5e-24 115.2 338 36.1
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 9.9e-24 114.8 286 40.2
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 9.9e-24 114.8 283 41.0
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 9.9e-24 114.8 283 41.0
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.3e-23 114.4 284 37.7
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.7e-23 114.0 278 39.9
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.7e-23 112.8 301 39.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.9e-23 112.5 314 38.5
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 4.9e-23 112.5 324 41.4
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 8.3e-23 111.7 286 38.1
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 8.3e-23 111.7 315 39.7
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-22 110.9 285 36.8
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-22 110.9 285 36.8
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.9e-22 110.5 338 37.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.4e-22 110.2 332 38.6
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.2e-22 109.8 300 39.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.1e-22 109.4 324 36.7
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.1e-22 109.4 328 36.6
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 7.1e-22 108.6 265 40.0
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 7.1e-22 108.6 320 36.9
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 2.7e-21 106.7 277 39.0
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 4.6e-21 105.9 298 41.3
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 6.0e-21 105.5 301 40.2
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.0e-21 105.5 300 40.3
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 7.8e-21 105.1 301 37.2
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.3e-20 104.4 303 38.6
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.7e-20 104.0 277 39.7
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 5.1e-20 102.4 327 36.7
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 8.6e-20 101.7 279 39.4
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 8.6e-20 101.7 320 36.6
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.5e-19 100.9 304 38.2
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.9e-19 100.5 282 38.7
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.3e-19 98.6 304 38.2
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 7.3e-19 98.6 302 38.7
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 4.7e-18 95.9 280 38.2
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 8.1e-18 95.1 303 38.0
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.1e-17 94.7 264 39.0
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.1e-17 94.7 264 39.0
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.4e-17 94.4 295 35.9
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.4e-17 94.4 226 38.1
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 4.0e-17 92.8 306 41.5
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 4.0e-17 92.8 297 37.4
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.8e-17 92.0 311 35.4
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 6.8e-17 92.0 284 43.0
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 8.9e-17 91.7 275 39.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.5e-16 90.9 290 36.9
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.0e-16 90.5 274 38.3
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 5.8e-16 89.0 243 39.1
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.7e-15 87.4 313 34.8
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.2e-15 87.0 214 40.7
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 2.9e-15 86.7 272 37.9
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 3.8e-15 86.3 282 34.4
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 8.4e-15 85.1 251 37.8
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 8.4e-15 85.1 286 34.6
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.1e-14 84.7 291 35.4
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.4e-14 84.3 327 33.6
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.9e-14 84.0 251 40.2
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 2.4e-14 83.6 311 36.0
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 7.1e-14 82.0 306 35.3
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.6e-13 80.9 230 40.9
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.6e-13 80.9 316 37.3
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.7e-13 80.1 272 36.8
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 2.7e-13 80.1 291 34.4
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.7e-13 80.1 296 36.1
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 2.7e-13 80.1 331 32.9
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 2.7e-13 80.1 303 33.3
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.5e-13 79.7 292 35.6
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 4.6e-13 79.3 315 34.3
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 4.6e-13 79.3 286 33.9
arahy.Tifrunner.gnm1.ann1.R48FJM Arachis hypogaea HOM05D004441 ORTHO05D003109 1.0e-12 78.2 82 62.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.0e-12 78.2 285 34.0
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.0e-12 78.2 302 32.5
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.3e-12 77.8 290 33.8
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.3e-12 77.8 293 34.1
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 2.3e-12 77.0 296 33.1
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 3.0e-12 76.6 285 34.0
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 5.1e-12 75.9 311 34.1
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 5.1e-12 75.9 296 35.5
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 6.6e-12 75.5 286 35.3
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 6.6e-12 75.5 286 35.3
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 6.6e-12 75.5 286 35.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 6.6e-12 75.5 292 35.3
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.6e-12 75.5 258 35.3
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 6.6e-12 75.5 297 36.7
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 8.7e-12 75.1 290 32.8
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.1e-11 74.7 286 35.0
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.1e-11 74.7 286 35.0
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.3e-11 73.2 331 31.1
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 4.3e-11 72.8 303 32.3
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 5.6e-11 72.4 305 32.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 7.3e-11 72.0 296 35.1
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 7.3e-11 72.0 235 35.3
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.2e-10 71.2 310 37.4
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 1.6e-10 70.9 279 33.3
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.6e-10 70.9 297 34.0
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.6e-10 70.9 331 30.8
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 2.1e-10 70.5 265 36.6
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 6.2e-10 68.9 267 34.1
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-09 68.2 324 32.4
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.1e-09 68.2 234 33.3
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.1e-09 68.2 173 39.3
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.4e-09 67.8 201 36.3
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.4e-09 67.8 332 31.9
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.8e-09 67.4 275 34.2
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.4e-09 67.0 293 32.4
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.4e-09 67.0 293 32.4
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 2.4e-09 67.0 215 34.9
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.4e-09 67.0 293 32.4
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 2.4e-09 67.0 215 34.9
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.4e-09 67.0 323 32.2
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.1e-09 66.6 259 33.2
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.1e-09 66.6 259 33.2
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 3.1e-09 66.6 310 31.9
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 3.1e-09 66.6 284 34.2
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 4.0e-09 66.2 201 36.3
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 5.2e-09 65.9 311 29.9
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 1.5e-08 64.3 247 31.2
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.6e-08 63.5 268 35.4
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 3.4e-08 63.2 274 33.6
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 3.4e-08 63.2 284 34.2
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 5.8e-08 62.4 255 33.3
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 5.8e-08 62.4 228 35.5
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 5.8e-08 62.4 243 33.7
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 9.9e-08 61.6 261 32.6
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 9.9e-08 61.6 269 34.6
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 1.3e-07 61.2 210 36.2
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 1.7e-07 60.8 260 33.8
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 2.9e-07 60.1 185 41.6
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.9e-07 60.1 304 30.9
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 4.9e-07 59.3 314 31.2
EL10Ac8g20284 Beta vulgaris HOM05D004441 ORTHO05D003109 8.4e-07 58.5 331 29.9
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 8.4e-07 58.5 300 32.3
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 1.1e-06 58.2 299 34.4
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.4e-06 57.8 252 32.1
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.9e-06 57.4 304 32.2
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 3.2e-06 56.6 278 32.7
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 3.2e-06 56.6 303 27.7
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 7.1e-06 55.5 236 34.3


User provided reference genes

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