Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G068451 Glycine max HOM05D001158 ORTHO05D000964 3.0e-47 191.4 92 100.0
Glyma.02G247900 Glycine max HOM05D001158 ORTHO05D000964 6.6e-10 67.4 32 93.8
Medtr5g079880 Medicago truncatula HOM05D001158 ORTHO05D000964 1.6e-08 62.8 31 87.1
VMungo0647G2054 Vigna mungo HOM05D001158 ORTHO05D000964 2.1e-08 62.4 31 90.3
Phvul.008G232800 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 2.8e-08 62.0 31 90.3
Psat2g041560 Pisum sativum HOM05D001158 ORTHO05D000964 3.6e-08 61.6 31 83.9
TPR.G3507 Trifolium pratense HOM05D001158 ORTHO05D000964 3.6e-08 61.6 30 90.0
LjContig00141g0001022 Lotus japonicus HOM05D001158 ORTHO05D000964 4.7e-08 61.2 32 84.4
CiPaw.02G184700 Carya illinoinensis HOM05D001158 ORTHO05D000964 6.1e-08 60.8 46 60.9
Ca_05893_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 1.4e-07 59.7 44 65.9
Lalb_Chr17g0346211 Lupinus albus HOM05D001158 ORTHO05D000964 1.4e-07 59.7 32 81.2
Hund16081 Selenicereus undatus HOM05D001158 ORTHO05D000964 1.4e-07 59.7 45 60.0
Thecc.10G040600 Theobroma cacao HOM05D001158 ORTHO05D000964 1.8e-07 59.3 32 81.2
QL08p059642 Quercus lobata HOM05D001158 ORTHO05D000964 3.0e-07 58.5 32 78.1
COL.COLO4_15057 Corchorus olitorius HOM05D001158 ORTHO05D000964 4.0e-07 58.2 46 58.7
CANSAT56G0809 Cannabis sativa HOM05D001158 ORTHO05D000964 5.2e-07 57.8 45 57.8
Dinv26024 Davidia involucrata HOM05D001158 ORTHO05D000964 5.2e-07 57.8 46 56.5
Lalb_Chr10g0104551 Lupinus albus HOM05D001158 ORTHO05D000964 5.2e-07 57.8 31 80.6
RcHm_v2.0_Chr1g0367731 Rosa chinensis HOM05D001158 ORTHO05D000964 6.8e-07 57.4 46 54.3
Dinv03041 Davidia involucrata HOM05D001158 ORTHO05D000964 8.9e-07 57.0 46 56.5
Hund16082 Selenicereus undatus HOM05D001158 ORTHO05D000964 8.9e-07 57.0 45 57.8
Prupe.2G236500 Prunus persica HOM05D001158 ORTHO05D000964 1.2e-06 56.6 45 53.3
Duzib114G0179 Durio zibethinus HOM05D001158 ORTHO05D000964 1.5e-06 56.2 32 75.0
MBI05_g28391_MAGBIO Magnolia biondii HOM05D001158 ORTHO05D000964 1.5e-06 56.2 46 54.3
A04p04460 Brassica napus HOM05D001158 ORTHO05D000964 2.0e-06 55.8 47 48.9
BraA04t16157Z Brassica rapa HOM05D001158 ORTHO05D000964 2.0e-06 55.8 47 48.9
CiPaw.01G288200 Carya illinoinensis HOM05D001158 ORTHO05D000964 2.6e-06 55.5 46 56.5
CsaV3_5G026720 Cucumis sativus L. HOM05D001158 ORTHO05D000964 2.6e-06 55.5 45 55.6
Gohir.A10G220100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 2.6e-06 55.5 32 75.0
Gohir.D10G230000 Gossypium hirsutum HOM05D001158 ORTHO05D000964 2.6e-06 55.5 32 75.0
Gorai.011G262100 Gossypium raimondii HOM05D001158 ORTHO05D000964 2.6e-06 55.5 32 75.0
Gorai.011G262500 Gossypium raimondii HOM05D001158 ORTHO05D000964 2.6e-06 55.5 32 75.0
MD07G1199800 Malus domestica HOM05D001158 ORTHO05D000964 2.6e-06 55.5 31 67.7
Haze_17075 Corylus avellana HOM05D001158 ORTHO05D000964 4.4e-06 54.7 32 68.8
DCAR_011712 Daucus carota HOM05D001158 ORTHO05D000964 4.4e-06 54.7 46 54.3
Gohir.D10G229600 Gossypium hirsutum HOM05D001158 ORTHO05D000964 4.4e-06 54.7 32 71.9
Lj8C83G14 Lonicera japonica HOM05D000370 ORTHO05D001366 5.7e-06 54.3 46 54.3
Potri.010G203000 Populus trichocarpa HOM05D001158 ORTHO05D000964 5.7e-06 54.3 46 52.2
BcaB02g08418 Brassica carinata HOM05D001158 ORTHO05D000964 7.5e-06 53.9 46 47.8
Ciclev10032979m.g Citrus clementina HOM05D001158 ORTHO05D000964 7.5e-06 53.9 46 54.3
Manes.07G116900 Manihot esculenta HOM05D001158 ORTHO05D000964 7.5e-06 53.9 46 54.3
MD01G1135100 Malus domestica HOM05D001158 ORTHO05D000964 9.8e-06 53.5 45 48.9
GSVIVG01016533001 Vitis vinifera HOM05D001158 ORTHO05D000964 9.8e-06 53.5 47 53.2


User provided reference genes

Program Settings