Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.9e-53 212.2 104 100.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.4e-48 195.3 104 94.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 5.3e-48 194.1 104 93.3
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.9e-45 185.7 108 90.7
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.3e-42 174.5 105 83.8
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.8e-38 161.4 108 79.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.8e-38 161.4 108 79.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.6e-36 156.0 109 73.4
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.3e-35 152.9 109 72.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.8e-35 152.5 114 73.7
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.8e-33 144.4 111 70.3
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 6.2e-33 144.1 109 70.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 8.1e-33 143.7 108 66.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.8e-32 142.5 107 73.8
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.0e-31 139.0 113 68.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.5e-31 137.9 108 66.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 8.4e-30 133.7 109 59.6
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.4e-29 132.9 107 65.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.5e-29 132.1 109 62.4
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 4.2e-29 131.3 107 64.5
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.7e-28 128.6 113 60.2
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.3e-27 126.3 109 58.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.3e-27 125.6 97 69.1
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.5e-26 122.9 111 55.9
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.3e-26 121.3 110 58.2
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 7.4e-26 120.6 111 57.7
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 7.4e-26 120.6 107 55.1
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.6e-26 120.2 113 59.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.6e-26 120.2 113 59.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 9.6e-26 120.2 111 54.1
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 2.8e-25 118.6 108 57.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.8e-25 118.6 112 56.2
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 4.8e-25 117.9 107 57.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.8e-25 117.9 108 59.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.2e-25 117.5 110 56.4
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.2e-25 117.5 110 56.4
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.2e-25 117.5 110 56.4
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.2e-25 117.1 109 56.9
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 8.2e-25 117.1 109 60.6
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.1e-24 115.2 109 53.2
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.1e-24 114.8 107 52.3
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 5.3e-24 114.4 107 55.1
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 6.9e-24 114.0 109 52.3
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 9.0e-24 113.6 108 56.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 9.0e-24 113.6 108 56.5
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.0e-24 113.6 112 57.1
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 9.0e-24 113.6 110 52.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.6e-23 112.1 123 52.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.6e-23 112.1 109 52.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.6e-23 112.1 110 52.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.4e-23 111.7 108 59.3
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.5e-23 111.3 107 54.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.5e-23 111.3 108 53.7
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 5.8e-23 110.9 106 55.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.0e-22 110.2 105 53.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.3e-22 109.8 110 50.0
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-22 109.4 107 51.4
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.2e-22 109.0 109 52.3
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-22 109.0 105 52.4
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.9e-22 108.6 109 55.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 5.0e-22 107.8 119 52.9
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-21 106.3 105 51.4
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.4e-21 106.3 92 59.8
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-21 106.3 106 52.8
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.5e-21 105.5 114 52.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.2e-21 105.1 107 53.3
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.2e-21 105.1 107 53.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 3.2e-21 105.1 104 54.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 9.3e-21 103.6 106 52.8
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.2e-20 103.2 97 55.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.6e-20 102.8 99 51.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.1e-20 102.4 110 45.5
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 3.5e-20 101.7 91 54.9
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 4.6e-20 101.3 123 48.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 4.6e-20 101.3 90 54.4
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 7.9e-20 100.5 104 49.0
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.3e-19 99.8 96 53.1
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.8e-19 99.4 108 47.2
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.3e-19 99.0 98 51.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.9e-19 98.2 109 46.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 6.7e-19 97.4 93 58.1
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.7e-19 97.1 111 45.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 8.7e-19 97.1 95 52.6
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-18 96.3 109 48.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.5e-18 95.5 110 44.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.7e-18 94.4 104 49.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.3e-17 93.2 109 46.8
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.6e-17 92.8 105 45.7
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 3.7e-17 91.7 77 59.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 6.3e-17 90.9 104 48.1
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.3e-17 90.9 123 45.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.2e-17 90.5 113 45.1
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-16 90.1 105 46.7
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-16 90.1 105 46.7
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-16 90.1 105 46.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.8e-16 89.4 117 47.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.4e-16 89.0 108 47.2
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.4e-16 89.0 117 47.0
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.1e-16 88.6 101 44.6
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 3.1e-16 88.6 105 45.7
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.1e-16 88.2 106 48.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 4.1e-16 88.2 98 55.1
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 5.3e-16 87.8 113 46.0
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 6.9e-16 87.4 105 44.8
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.9e-16 87.4 114 43.9
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.2e-15 86.7 107 42.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.5e-15 86.3 104 45.2
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.5e-15 86.3 107 41.1
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.0e-15 85.9 104 44.2
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.4e-15 85.1 108 43.5
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.5e-15 84.7 105 49.5
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 4.5e-15 84.7 46 87.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.0e-14 83.6 114 44.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.3e-14 83.2 98 48.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.3e-14 83.2 89 51.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.7e-14 82.8 105 43.8
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.9e-14 82.0 114 45.6
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.8e-14 81.6 106 44.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.8e-14 81.6 106 44.3
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.5e-14 80.9 117 42.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.5e-14 80.9 104 42.3
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.5e-14 80.5 109 45.9
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.1e-13 80.1 76 48.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-13 79.7 96 43.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.9e-13 79.3 106 43.4
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.9e-13 79.3 109 45.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.5e-13 79.0 106 43.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.5e-13 79.0 106 43.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.2e-13 77.4 106 43.4
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 7.2e-13 77.4 99 42.4
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.6e-12 76.3 104 41.3
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.1e-12 75.9 87 48.3
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.4e-11 73.2 108 43.5
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.4e-11 73.2 93 43.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.8e-11 72.8 93 40.9
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-11 71.6 105 41.0
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 6.7e-11 70.9 107 37.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.5e-10 69.7 102 40.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.5e-10 68.9 115 40.0
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 2.5e-10 68.9 81 48.1
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 3.3e-10 68.6 95 42.1
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 5.7e-10 67.8 64 42.2
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 5.7e-10 67.8 112 37.5
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 7.4e-10 67.4 106 37.7
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.2e-09 63.9 93 43.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.8e-08 62.8 91 45.1
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.2e-07 60.1 111 36.0
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.0e-07 59.3 104 36.5


User provided reference genes

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