Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 6.9e-290 1000.0 523 100.0
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 3.9e-240 834.7 521 84.5
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 4.4e-212 741.5 527 76.3
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 2.7e-209 732.3 535 73.8
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 1.4e-202 709.9 524 73.5
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 7.1e-202 707.6 535 73.3
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 6.7e-200 701.0 526 72.6
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 1.8e-197 693.0 526 73.6
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 2.7e-193 679.1 422 83.4
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 3.7e-182 642.1 582 63.7
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 2.4e-181 639.4 511 69.9
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 2.4e-181 639.4 511 69.9
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 7.7e-164 581.3 526 60.8
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 7.2e-162 574.7 542 58.7
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 2.8e-158 562.8 525 59.8
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 2.6e-156 556.2 505 58.6
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 8.0e-153 544.7 509 59.7
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 8.8e-152 541.2 535 58.1
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 1.2e-151 540.8 516 58.9
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 2.6e-151 539.7 523 58.3
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 3.3e-151 539.3 522 56.3
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 9.7e-151 537.7 521 56.6
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 1.3e-150 537.3 520 57.9
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 1.8e-149 533.5 516 57.8
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.3e-147 527.3 523 57.4
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 1.7e-147 526.9 527 54.1
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 2.2e-147 526.6 513 55.8
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 8.5e-147 524.6 513 55.6
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 3.2e-146 522.7 500 57.2
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 5.5e-146 521.9 513 55.4
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 3.4e-143 512.7 538 55.2
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.2e-142 510.0 544 54.2
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 1.8e-141 506.9 506 55.3
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 2.9e-139 499.6 457 59.1
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 1.4e-136 490.7 566 51.8
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 2.3e-136 490.0 526 52.5
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 6.8e-136 488.4 512 54.7
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 8.9e-136 488.0 523 52.0
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 8.9e-136 488.0 538 54.6
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 1.2e-135 487.6 532 52.1
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 7.5e-135 485.0 501 52.9
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 2.8e-134 483.0 499 53.1
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 3.1e-133 479.6 544 50.2
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 1.2e-132 477.6 540 49.8
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 1.2e-132 477.6 527 51.8
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 2.0e-132 476.9 565 49.2
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 3.5e-132 476.1 488 54.5
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 4.5e-132 475.7 522 50.2
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 1.7e-131 473.8 500 51.2
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 1.7e-131 473.8 522 51.3
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 3.8e-131 472.6 512 50.4
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 5.0e-131 472.2 514 50.2
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 8.6e-131 471.5 469 55.4
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 3.3e-130 469.5 518 52.3
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 1.2e-129 467.6 501 50.9
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 1.2e-129 467.6 521 52.0
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 2.1e-129 466.8 520 49.2
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 1.4e-128 464.2 502 50.6
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 2.3e-128 463.4 516 49.8
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 4.0e-128 462.6 464 55.6
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 8.9e-128 461.5 498 50.4
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 8.9e-128 461.5 510 50.2
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.5e-127 460.7 517 50.9
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 2.9e-126 456.4 511 48.9
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 3.7e-126 456.1 544 49.4
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 4.9e-126 455.7 513 51.3
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 1.1e-125 454.5 505 50.7
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 1.9e-125 453.8 518 49.6
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 4.6e-124 449.1 410 59.3
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 1.7e-123 447.2 508 49.4
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 2.3e-123 446.8 517 47.0
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 3.9e-123 446.0 524 48.3
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 6.6e-123 445.3 583 46.8
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 6.6e-123 445.3 502 49.6
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 8.6e-123 444.9 525 49.3
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 1.2e-121 441.0 520 48.3
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 2.3e-120 436.8 517 46.6
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 3.1e-120 436.4 523 47.6
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 5.8e-119 432.2 498 52.2
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 4.9e-118 429.1 489 51.1
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 6.4e-118 428.7 467 53.3
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 2.4e-117 426.8 456 52.6
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 1.2e-116 424.5 456 50.7
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 6.2e-113 412.1 490 48.0
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 4.0e-112 409.5 537 44.7
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 6.8e-112 408.7 524 46.2
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 6.6e-107 392.1 373 59.2
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 7.3e-106 388.7 534 45.1
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 2.1e-105 387.1 214 93.0
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.3e-102 377.9 346 62.1
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 3.2e-101 373.2 513 43.9
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 4.9e-94 349.4 569 40.2
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 1.9e-93 347.4 422 51.7
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 2.4e-93 347.1 194 91.8
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 2.4e-93 347.1 443 45.6
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 2.7e-84 317.0 370 47.6
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 3.5e-84 316.6 520 39.0
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 5.1e-83 312.8 530 39.1
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 6.0e-76 289.3 455 42.0
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 6.7e-75 285.8 505 38.2
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 2.7e-68 263.8 526 35.4
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 5.7e-66 256.1 547 32.2
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 9.7e-66 255.4 384 37.8
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 1.2e-63 248.4 372 39.0
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 7.7e-55 219.2 170 64.1
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 4.2e-53 213.4 271 49.1
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 9.4e-53 212.2 410 33.7
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 2.0e-47 194.5 210 50.5
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 4.8e-41 173.3 211 46.9
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 7.0e-40 169.5 211 51.2
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 2.8e-33 147.5 166 50.0
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 5.9e-31 139.8 192 41.1
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 5.5e-21 106.7 489 25.2
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.2e-18 99.0 120 46.7
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 3.4e-18 97.4 149 43.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 2.3e-11 74.7 124 42.7
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 1.5e-10 72.0 70 45.7
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 3.4e-10 70.9 53 64.2
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 1.1e-08 65.9 109 33.9
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 7.0e-08 63.2 113 43.4
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 9.2e-08 62.8 50 64.0
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.0e-06 59.3 111 41.4
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-06 58.9 111 37.8
Haze_23483 Corylus avellana HOM05D006347 ORTHO05D007835 8.6e-06 56.2 108 41.7


User provided reference genes

Program Settings