Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2526.5 1259 100.0
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2357.4 1259 93.1
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2270.7 1259 89.6
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2266.5 1259 89.3
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2257.3 1260 89.0
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2243.4 1274 87.4
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2225.7 1259 88.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2204.5 1259 87.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2204.1 1260 87.1
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2196.8 1286 85.7
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2161.0 1162 92.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2129.8 1258 84.3
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2016.9 1262 80.2
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2009.2 1257 78.8
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2001.9 1257 78.6
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2001.1 1268 78.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1998.0 1262 79.2
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1996.9 1262 78.7
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1995.3 1259 79.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1992.2 1258 78.9
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1991.1 1264 78.3
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1990.3 1264 78.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1259 78.4
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1986.8 1266 78.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1980.7 1260 78.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1978.0 1259 77.4
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1976.4 1261 78.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1974.5 1259 77.4
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1969.9 1258 78.5
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1965.3 1257 77.7
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1961.4 1261 77.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1959.9 1258 77.3
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1959.1 1258 77.5
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1958.3 1274 76.8
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1958.0 1258 77.1
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1955.3 1257 77.2
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1301 75.4
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1951.8 1260 76.7
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1947.9 1258 76.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1944.5 1258 76.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1942.5 1258 76.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1934.1 1259 76.3
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1928.7 1241 78.6
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1926.8 1257 76.6
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1926.4 1007 95.6
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1912.9 1261 74.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1907.1 1518 66.9
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1901.7 1287 74.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1900.9 1266 75.0
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1898.2 1264 75.2
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1895.6 1262 74.9
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1266 74.6
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1889.8 1258 75.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1887.8 1265 73.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1886.3 1260 74.4
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1884.4 1265 73.7
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1326 72.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1881.3 1261 73.7
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1290 72.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1878.6 1262 74.0
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1874.4 1265 73.7
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1265 73.6
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1872.8 1265 73.8
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1870.9 1267 73.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1266 73.9
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1246 75.0
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1867.4 1271 73.3
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1864.4 1257 74.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1863.2 1258 73.5
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1264 72.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1856.6 1264 72.8
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1856.6 1266 72.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1854.7 1261 73.2
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1853.2 1269 72.9
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1852.0 1265 72.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1849.7 1258 72.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1848.6 1260 72.9
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1844.7 1259 72.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1843.2 1265 72.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1842.8 1265 72.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1840.9 1268 72.7
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1840.1 1259 72.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1837.8 1260 73.3
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1835.5 1267 72.5
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1260 72.7
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1832.4 1268 71.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1808.1 1170 76.7
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1786.9 1244 71.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1781.1 1275 71.5
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1757.7 1323 68.0
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1747.6 1237 71.1
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1744.9 1258 68.2
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1699.9 1252 68.2
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1078 73.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1600.9 1033 77.7
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1586.6 1231 65.1
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1571.6 1100 71.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1569.7 1262 63.1
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1552.3 1052 74.1
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1521.9 1059 72.1
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1519.2 1037 73.9
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1441.8 1098 68.0
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1425.2 1013 70.9
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1390.9 928 75.9
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1384.4 856 79.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1303.5 1392 50.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1184.9 1358 47.2
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1178.3 1265 53.0
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1147.1 775 73.2
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1125.9 746 73.1
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.7e-302 1043.1 865 62.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 3.1e-296 1022.3 1012 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.5e-285 986.1 1165 45.9
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-278 962.6 854 62.2
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.7e-262 910.2 592 78.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.2e-248 862.4 538 78.3
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.0e-231 805.4 445 89.4
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.0e-198 698.4 1434 33.3
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-177 628.2 454 68.9
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.7e-156 557.0 499 58.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 8.6e-153 545.8 306 85.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 6.4e-116 423.3 316 65.2
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 7.2e-99 366.7 205 85.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.3e-96 357.8 318 62.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.2e-91 341.3 217 80.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 6.1e-90 337.0 372 47.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-89 334.7 213 80.3
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.7e-88 329.7 194 78.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.1e-86 324.7 256 61.7
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 1.0e-76 293.1 172 81.4
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-73 282.3 159 86.8
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-72 279.3 262 54.2
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 256 55.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 256 55.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 256 55.9
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.0e-68 266.5 152 82.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 4.2e-67 261.2 194 64.9
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 4.5e-61 241.1 197 61.4
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.9e-60 238.4 450 34.2
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.0e-56 225.7 151 74.8
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 9.8e-56 223.4 151 70.2
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.9e-51 209.1 132 73.5
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.0e-49 203.4 143 65.7
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.6e-45 189.5 147 66.7
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.6e-45 188.0 107 81.3
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.6e-44 183.7 107 80.4
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.6e-42 179.5 107 79.4
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.6e-42 179.5 107 79.4
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.8e-42 178.7 168 55.4
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-42 178.3 120 74.2
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.8e-41 176.0 106 79.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-41 175.6 102 84.3
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 8.9e-41 173.7 130 66.2
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.4e-39 167.5 98 85.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-36 159.8 98 75.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.9e-35 156.0 116 68.1
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.9e-31 142.1 81 76.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 9.2e-30 137.1 65 93.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-29 136.7 78 78.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.0e-28 133.7 123 59.3
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-25 123.2 87 67.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.4e-22 113.2 75 76.0
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-21 110.2 110 54.5
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 4.6e-21 108.2 107 46.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.6e-18 98.6 62 71.0
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 8.1e-18 97.4 57 78.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 5.3e-17 94.7 573 22.7
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-16 93.2 81 58.0
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.9e-15 88.2 52 73.1
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-13 82.8 99 46.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 8.7e-12 77.4 388 22.4
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.5e-11 75.9 45 80.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 9.6e-11 73.9 69 49.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.0e-09 67.4 52 65.4


User provided reference genes

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