Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.2e-103 379.0 198 100.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-81 306.2 199 81.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 9.3e-78 293.9 198 77.8
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.6e-72 275.8 201 71.6
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 4.2e-70 268.5 196 72.4
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 6.0e-69 264.6 197 70.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.0e-68 263.8 190 72.6
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-68 263.1 194 70.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-68 263.1 196 71.4
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.0e-68 262.3 193 69.4
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.9e-68 261.9 171 77.2
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 5.1e-68 261.5 196 70.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.9e-67 259.6 195 69.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.5e-67 259.2 197 68.0
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.5e-67 259.2 167 76.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 7.4e-67 257.7 179 72.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 9.6e-67 257.3 197 67.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.3e-66 256.9 181 71.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.3e-66 256.9 194 69.6
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.8e-66 255.8 195 67.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.8e-66 255.8 168 76.8
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.8e-66 255.8 193 67.9
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.7e-66 255.4 197 66.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.7e-66 255.4 203 66.5
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.8e-66 255.0 193 67.9
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.8e-66 255.0 186 69.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.2e-66 254.6 198 67.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.1e-66 254.2 198 66.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-65 253.8 197 71.1
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-65 253.1 167 74.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-65 253.1 197 67.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.0e-65 251.9 187 69.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.0e-65 251.9 180 72.2
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.3e-65 251.5 197 68.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.2e-64 250.4 180 71.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.2e-64 250.4 182 69.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 197 68.5
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 168 75.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.6e-64 249.2 195 67.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 5.8e-64 248.1 185 67.6
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 7.6e-64 247.7 202 66.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.0e-63 247.3 194 67.0
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.8e-63 245.4 180 70.6
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 8.4e-63 244.2 202 63.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 8.4e-63 244.2 194 67.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.9e-62 243.0 192 66.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.2e-62 242.3 194 63.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.2e-62 242.3 201 62.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 4.2e-62 241.9 168 70.2
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.5e-62 241.5 197 64.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 9.3e-62 240.7 178 67.4
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-61 240.4 181 69.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.2e-61 240.4 177 67.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.2e-61 240.4 169 70.4
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.1e-61 239.6 168 67.9
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.1e-61 239.6 203 64.0
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.1e-61 239.6 203 64.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.1e-61 239.6 195 62.1
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-61 239.2 161 72.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.7e-61 239.2 181 69.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.7e-61 239.2 185 64.3
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.5e-61 238.8 170 71.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.5e-61 238.8 170 71.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.6e-61 238.4 197 61.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 4.6e-61 238.4 170 71.2
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 4.6e-61 238.4 170 71.2
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.6e-61 238.4 185 65.4
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 4.6e-61 238.4 168 70.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.0e-61 238.0 169 70.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.9e-61 237.7 194 63.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.3e-60 236.9 201 62.2
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.8e-60 236.5 177 66.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 208 60.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.0e-60 235.7 204 62.7
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.9e-60 235.3 167 69.5
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.9e-60 235.3 195 64.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 3.9e-60 235.3 180 67.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 6.7e-60 234.6 196 61.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 6.7e-60 234.6 182 65.4
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.7e-60 234.6 167 67.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.9e-59 233.0 182 66.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.5e-59 232.6 186 64.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 3.3e-59 232.3 201 61.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.7e-59 231.5 182 63.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.7e-59 231.5 199 61.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.3e-58 230.3 154 72.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.3e-58 230.3 183 66.1
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.8e-58 229.2 180 66.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.8e-58 229.2 206 60.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.8e-58 229.2 197 60.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 4.8e-58 228.4 195 60.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 6.3e-58 228.0 197 60.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.2e-58 227.6 182 64.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.2e-58 227.6 197 60.4
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.4e-57 226.9 171 65.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 197 60.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.4e-57 226.1 226 57.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.4e-57 226.1 220 59.1
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 5.3e-57 224.9 195 61.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.3e-57 224.9 184 66.8
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.6e-56 222.6 190 61.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 4.5e-56 221.9 192 61.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 4.5e-56 221.9 195 61.0
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.5e-56 221.9 171 65.5
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.9e-56 221.5 193 62.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.3e-55 220.3 175 62.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.9e-55 219.2 174 62.6
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.8e-55 218.8 167 65.9
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 5.0e-55 218.4 166 67.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 217 56.2
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.5e-54 214.9 187 59.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-53 213.8 189 60.8
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.6e-53 213.4 195 59.5
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.6e-53 211.8 199 58.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.1e-53 211.5 166 62.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 6.1e-53 211.5 153 66.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 6.1e-53 211.5 153 66.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.5e-51 206.1 169 60.9
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-49 200.7 142 69.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.9e-49 198.0 187 54.5
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.0e-47 191.8 189 58.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.0e-47 191.8 195 55.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.4e-44 183.7 179 54.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.7e-42 175.6 179 52.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.3e-42 174.9 163 53.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-41 173.7 147 60.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 6.9e-41 171.4 165 52.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.0e-39 167.5 224 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.1e-38 164.1 165 54.5
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.4e-35 151.4 168 47.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-34 149.8 173 48.6
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.8e-33 146.7 125 60.0
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.1e-33 145.6 165 44.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 9.1e-33 144.4 101 73.3
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.2e-32 144.1 127 61.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.5e-32 142.1 101 72.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.5e-31 137.9 114 63.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.5e-31 137.9 97 69.1
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.2e-30 136.0 97 68.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.2e-29 134.0 139 52.5
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.6e-29 133.7 148 48.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-28 129.8 99 65.7
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.2e-26 123.2 82 75.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 5.9e-24 115.2 102 60.8
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 7.7e-24 114.8 97 59.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 8.3e-18 94.7 68 67.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.0e-17 91.7 167 35.9
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.9e-16 88.6 79 57.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.3e-15 87.4 135 34.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.2e-13 80.9 62 66.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.2e-11 74.3 74 52.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.1e-09 65.9 98 46.9
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.0e-09 65.1 96 42.7
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.5e-08 62.4 43 76.7
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.3e-07 60.8 41 73.2
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 5.0e-07 58.9 62 58.1
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-06 56.2 69 47.8
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.3e-06 56.2 62 56.5


User provided reference genes

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