Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 4.5e-50 201.1 108 100.0
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 3.0e-46 188.3 108 93.5
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 3.2e-40 168.3 112 81.2
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 3.0e-38 161.8 114 78.1
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 4.8e-36 154.5 100 81.0
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 6.9e-35 150.6 100 80.0
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.0e-34 149.1 100 80.0
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 2.6e-34 148.7 95 83.2
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 2.6e-34 148.7 95 83.2
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 4.2e-32 141.4 97 78.4
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 4.2e-32 141.4 97 78.4
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 6.1e-31 137.5 91 82.4
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 7.9e-31 137.1 94 80.9
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 7.9e-31 137.1 89 79.8
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 1.0e-30 136.7 94 76.6
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.4e-30 136.3 102 71.6
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 1.4e-30 136.3 89 78.7
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 2.3e-30 135.6 97 77.3
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 5.1e-30 134.4 102 70.6
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 6.7e-30 134.0 90 81.1
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 8.8e-30 133.7 97 76.3
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 8.8e-30 133.7 102 70.6
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 8.8e-30 133.7 101 69.3
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 8.8e-30 133.7 94 78.7
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 1.1e-29 133.3 101 70.3
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.5e-29 132.9 97 79.4
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 1.9e-29 132.5 94 76.6
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 2.5e-29 132.1 101 73.3
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 2.5e-29 132.1 94 77.7
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 3.3e-29 131.7 105 72.4
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 4.3e-29 131.3 94 78.7
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 5.7e-29 131.0 97 74.2
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 7.4e-29 130.6 97 73.2
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 9.7e-29 130.2 96 75.0
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.3e-28 129.8 101 74.3
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 1.7e-28 129.4 101 75.2
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 6.3e-28 127.5 94 75.5
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 6.3e-28 127.5 90 75.6
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 1.8e-27 125.9 101 73.3
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 3.1e-27 125.2 101 71.3
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 3.1e-27 125.2 90 73.3
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 5.3e-27 124.4 107 69.2
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 9.1e-27 123.6 91 75.8
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 1.5e-26 122.9 101 72.3
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 2.6e-26 122.1 88 76.1
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 3.4e-26 121.7 102 70.6
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 4.5e-26 121.3 91 72.5
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 5.9e-26 120.9 94 73.4
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 1.0e-25 120.2 90 73.3
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 1.3e-25 119.8 94 73.4
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 2.2e-25 119.0 101 69.3
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 1.1e-24 116.7 100 67.0
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 5.5e-24 114.4 100 66.0
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 5.5e-24 114.4 95 69.5
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 9.4e-24 113.6 101 67.3
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 9.4e-24 113.6 101 71.3
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 9.4e-24 113.6 101 66.3
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 1.6e-23 112.8 90 70.0
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 2.7e-23 112.1 94 68.1
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 4.7e-23 111.3 93 63.4
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 4.7e-23 111.3 89 66.3
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 1.0e-22 110.2 90 70.0
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 1.4e-22 109.8 97 63.9
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.4e-22 109.8 95 64.2
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 1.8e-22 109.4 89 65.2
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 2.3e-22 109.0 94 68.1
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 3.0e-22 108.6 94 68.1
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 3.9e-22 108.2 90 64.4
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 3.9e-22 108.2 90 63.3
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 3.9e-22 108.2 99 64.6
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 5.1e-22 107.8 90 63.3
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 5.1e-22 107.8 90 63.3
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 5.1e-22 107.8 89 66.3
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 1.1e-21 106.7 90 62.2
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 1.1e-21 106.7 90 62.2
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.1e-21 106.7 90 67.8
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 1.1e-21 106.7 84 72.6
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 7.4e-21 104.0 90 66.7
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 9.7e-21 103.6 100 59.0
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 1.3e-20 103.2 90 60.0
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 1.7e-20 102.8 82 70.7
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 3.7e-20 101.7 98 59.2
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 3.7e-20 101.7 142 50.0
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 3.7e-20 101.7 90 64.4
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.1e-19 100.1 99 58.6
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 4.1e-19 98.2 89 59.6
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 4.1e-19 98.2 64 81.2
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 1.2e-18 96.7 100 56.0
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 1.5e-18 96.3 100 55.0
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 2.6e-18 95.5 108 51.9
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 7.7e-18 94.0 116 50.0
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 3.8e-17 91.7 89 58.4
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 5.0e-17 91.3 81 67.9
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 5.0e-17 91.3 84 67.9
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 4.2e-16 88.2 60 81.7
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 5.5e-16 87.8 84 65.5
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 4.7e-15 84.7 73 61.6
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 1.0e-14 83.6 90 60.0
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 3.3e-13 78.6 80 53.8
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 1.4e-11 73.2 94 47.9
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 1.2e-10 70.1 84 48.8
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 1.6e-10 69.7 101 44.6
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 4.2e-08 61.6 89 46.1


User provided reference genes

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