Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.7e-44 182.6 110 100.0
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 9.2e-43 176.8 110 96.4
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 7.3e-40 167.2 113 91.2
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 6.8e-38 160.6 112 82.1
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 6.8e-38 160.6 112 82.1
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 1.5e-37 159.5 112 90.2
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 1.7e-36 156.0 110 81.8
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.1e-35 153.3 110 78.2
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 1.1e-35 153.3 106 88.7
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 9.2e-35 150.2 113 80.5
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 9.2e-35 150.2 105 82.9
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 6.0e-34 147.5 111 76.6
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 6.0e-34 147.5 111 78.4
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 6.0e-34 147.5 111 78.4
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 2.3e-33 145.6 110 71.8
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 2.3e-33 145.6 110 72.7
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 2.3e-33 145.6 111 77.5
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 3.0e-33 145.2 111 77.5
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 6.6e-33 144.1 111 72.1
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 1.1e-32 143.3 111 69.4
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 2.5e-32 142.1 111 79.3
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 2.5e-32 142.1 115 74.8
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 2.5e-32 142.1 111 66.7
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 2.5e-32 142.1 111 66.7
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 3.3e-32 141.7 110 72.7
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 4.3e-32 141.4 111 65.8
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 4.3e-32 141.4 111 65.8
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 5.6e-32 141.0 111 64.9
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 7.3e-32 140.6 105 74.3
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 9.5e-32 140.2 110 71.8
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 9.5e-32 140.2 111 67.6
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.2e-31 139.8 111 73.0
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 1.2e-31 139.8 111 71.2
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 1.2e-31 139.8 111 65.8
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 1.2e-31 139.8 111 65.8
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 1.6e-31 139.4 111 67.6
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 2.1e-31 139.0 110 63.6
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 2.8e-31 138.7 111 65.8
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 2.8e-31 138.7 111 73.0
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 3.6e-31 138.3 111 67.6
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 3.6e-31 138.3 111 67.6
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 4.7e-31 137.9 110 67.3
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 6.2e-31 137.5 106 77.4
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 6.2e-31 137.5 111 78.4
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.1e-30 136.7 111 66.7
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 1.1e-30 136.7 110 65.5
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.1e-30 136.7 110 63.6
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 1.1e-30 136.7 110 70.9
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.4e-30 136.3 111 68.5
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.4e-30 136.3 110 66.4
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 1.4e-30 136.3 115 73.9
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 1.4e-30 136.3 111 82.9
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 1.8e-30 136.0 113 74.3
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 1.8e-30 136.0 113 74.3
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 1.8e-30 136.0 110 69.1
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.8e-30 136.0 111 64.9
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 2.3e-30 135.6 114 73.7
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 2.3e-30 135.6 110 62.7
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 5.2e-30 134.4 111 64.0
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 5.2e-30 134.4 111 69.4
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 8.9e-30 133.7 105 71.4
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 1.2e-29 133.3 110 66.4
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.2e-29 133.3 110 68.2
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.0e-29 132.5 110 60.9
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 2.0e-29 132.5 104 76.9
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 3.4e-29 131.7 110 67.3
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 4.4e-29 131.3 103 67.0
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 4.4e-29 131.3 111 64.9
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 5.8e-29 131.0 110 68.2
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 9.9e-29 130.2 112 75.9
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 1.3e-28 129.8 105 64.8
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 1.3e-28 129.8 105 66.7
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 2.9e-28 128.6 114 76.3
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 2.9e-28 128.6 110 65.5
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 2.9e-28 128.6 119 61.3
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 4.9e-28 127.9 114 73.7
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 4.9e-28 127.9 109 64.2
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 6.4e-28 127.5 110 61.8
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 6.4e-28 127.5 110 68.2
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 6.4e-28 127.5 110 73.6
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 8.3e-28 127.1 111 61.3
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 1.1e-27 126.7 107 73.8
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 1.1e-27 126.7 107 73.8
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 4.1e-27 124.8 109 67.9
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 4.1e-27 124.8 110 76.4
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.4e-27 124.4 104 63.5
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.4e-27 124.4 104 63.5
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 7.1e-27 124.0 100 75.0
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 2.1e-26 122.5 111 66.7
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 2.1e-26 122.5 111 66.7
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 2.7e-26 122.1 110 64.5
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 3.5e-26 121.7 103 67.0
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 6.0e-26 120.9 105 63.8
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 1.1e-24 116.7 63 88.9
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 1.1e-24 116.7 111 71.2
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 1.9e-24 115.9 105 56.2
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 2.5e-24 115.5 111 71.2
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 1.6e-23 112.8 112 67.0
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.1e-23 112.5 92 67.4
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 4.7e-23 111.3 98 71.4
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 1.1e-22 110.2 110 62.7
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 1.4e-22 109.8 109 56.9
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 3.1e-22 108.6 87 70.1
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 5.2e-22 107.8 109 64.2
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 8.9e-22 107.1 81 82.7
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 1.5e-21 106.3 111 50.5
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.7e-20 102.8 56 89.3
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 2.9e-20 102.1 86 64.0
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 4.9e-20 101.3 62 79.0
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 2.5e-16 89.0 109 53.2
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 1.1e-14 83.6 58 69.0
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 5.2e-14 81.3 73 74.0
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 7.6e-13 77.4 115 51.3
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 1.4e-11 73.2 73 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 5.4e-11 71.2 102 54.9
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 7.8e-10 67.4 108 49.1
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 3.9e-09 65.1 32 87.5
SMO308G0024 Selaginella moellendorffii HOM05D006768 ORTHO05D008436 1.1e-06 57.0 110 52.7
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 4.0e-06 55.1 33 75.8


User provided reference genes

Program Settings