Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.0e-105 386.7 193 100.0
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 5.7e-88 327.8 198 84.8
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 5.3e-86 321.2 199 82.9
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.0e-69 266.2 206 69.9
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 5.9e-69 264.6 194 73.2
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 2.0e-64 249.6 213 61.5
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 1.7e-63 246.5 199 66.3
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.1e-62 243.8 207 63.8
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 1.4e-62 243.4 215 61.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 2.4e-62 242.7 209 61.2
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 3.1e-62 242.3 213 60.1
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 3.1e-62 242.3 209 62.2
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.0e-62 241.1 213 60.1
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.0e-62 241.1 213 60.1
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 7.0e-62 241.1 211 63.0
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 7.0e-62 241.1 209 62.2
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.5e-61 240.0 221 63.3
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.0e-61 239.6 209 61.7
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.6e-61 239.2 208 63.0
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.6e-61 239.2 210 62.4
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.3e-60 236.9 213 60.1
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.7e-60 236.5 206 62.1
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.9e-60 235.7 211 62.1
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 2.9e-60 235.7 208 60.6
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.8e-60 235.3 207 62.3
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 3.8e-60 235.3 211 62.1
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 6.5e-60 234.6 211 62.1
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 8.5e-60 234.2 209 61.7
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 8.5e-60 234.2 206 61.7
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 2.5e-59 232.6 202 63.9
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.2e-59 232.3 198 63.6
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.6e-58 229.9 203 62.1
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.6e-58 229.9 203 62.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 2.1e-58 229.6 207 59.9
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 2.7e-58 229.2 153 76.5
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 4.7e-58 228.4 202 60.9
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 8.0e-58 227.6 230 56.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.0e-57 225.7 216 56.9
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 5.2e-57 224.9 223 57.0
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 1.5e-56 223.4 219 58.0
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 2.0e-56 223.0 224 56.7
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.6e-56 222.6 290 48.6
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 4.4e-56 221.9 215 56.7
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 4.8e-55 218.4 216 55.1
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 6.3e-55 218.0 247 52.2
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 8.2e-55 217.6 206 59.7
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.1e-54 217.2 191 57.6
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 3.1e-54 215.7 139 76.3
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.1e-54 215.7 211 57.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 3.1e-54 215.7 193 59.1
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 7.0e-54 214.5 191 59.2
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 1.6e-53 213.4 210 56.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 1.6e-53 213.4 210 57.6
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.5e-53 212.2 211 56.9
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 4.5e-53 211.8 201 55.2
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 4.5e-53 211.8 203 58.1
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 7.7e-53 211.1 231 51.5
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.2e-52 209.5 231 51.5
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.2e-52 209.5 199 56.3
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.5e-52 208.0 213 54.0
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 6.5e-52 208.0 201 55.2
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 8.5e-52 207.6 204 54.9
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 8.5e-52 207.6 193 58.5
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.1e-51 207.2 219 54.3
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.9e-51 206.5 214 53.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.2e-51 205.3 207 54.1
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 5.5e-51 204.9 180 62.2
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 5.5e-51 204.9 215 52.6
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 7.2e-51 204.5 200 57.0
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 7.2e-51 204.5 218 52.3
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.2e-50 203.8 212 57.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.7e-50 201.8 216 50.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.7e-50 201.8 210 53.8
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.0e-49 200.7 216 54.2
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.8e-49 199.9 196 52.6
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.8e-49 199.9 196 52.6
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.8e-49 199.9 198 56.1
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 2.3e-49 199.5 277 47.3
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 8.8e-49 197.6 176 60.8
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.2e-48 197.2 194 53.1
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 2.0e-48 196.4 196 52.0
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 2.6e-48 196.1 200 52.0
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 4.4e-48 195.3 196 53.6
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 5.7e-48 194.9 224 49.6
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 8.3e-47 191.0 245 47.8
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.1e-46 190.7 211 52.6
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.1e-46 190.7 236 50.0
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.1e-46 189.1 188 56.9
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.0e-46 188.0 208 53.4
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 2.2e-44 183.0 232 47.8
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 7.2e-43 177.9 139 69.1
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 4.0e-41 172.2 209 44.0
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.1e-38 164.1 203 46.8
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 4.2e-35 152.1 111 65.8
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 1.8e-33 146.7 82 89.0
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 3.0e-33 146.0 201 46.3
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.2e-31 139.8 188 46.8
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.2e-29 134.0 121 62.0
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.2e-24 117.5 122 54.9
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.5e-24 114.8 133 51.1
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 3.2e-22 109.4 72 70.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.7e-21 106.3 194 39.7
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 3.3e-19 99.4 82 54.9
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 9.5e-19 97.8 127 50.4
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.9e-15 85.5 78 51.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 6.4e-15 85.1 146 39.7
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.2e-14 82.8 78 50.0
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 5.4e-14 82.0 54 75.9
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 3.3e-11 72.8 122 36.1
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 4.3e-11 72.4 122 36.1
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 2.1e-10 70.1 132 31.1
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.8e-10 69.7 46 69.6
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 4.7e-10 68.9 112 34.8
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 6.2e-10 68.6 157 32.5
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 6.2e-10 68.6 122 34.4
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.4e-09 67.4 129 31.0
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 1.4e-09 67.4 129 31.0
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.4e-09 67.4 112 33.9
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 4.0e-09 65.9 128 31.2
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 4.0e-09 65.9 112 33.9
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 5.2e-09 65.5 122 34.4
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 8.9e-09 64.7 112 33.9
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 4.4e-08 62.4 104 32.7
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 7.6e-08 61.6 129 29.5
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 9.9e-08 61.2 164 29.9
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.7e-07 60.5 153 30.7
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 1.7e-07 60.5 130 28.5
arahy.Tifrunner.gnm1.ann1.43EHF4 Arachis hypogaea HOM05D003946 ORTHO05D004485 2.2e-07 60.1 106 34.9
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 2.2e-07 60.1 121 33.1
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 2.9e-07 59.7 123 30.1
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 3.7e-07 59.3 133 30.8
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 3.7e-07 59.3 133 30.8
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 3.7e-07 59.3 122 32.8
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 6.4e-07 58.5 165 27.9
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 1.1e-06 57.8 148 27.0
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 1.1e-06 57.8 134 30.6
FvH4_3g34740 Fragaria vesca HOM05D003946 ORTHO05D004485 1.9e-06 57.0 116 32.8
FAN15G3651 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.9e-06 57.0 129 33.3
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-06 56.6 116 32.8
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 3.2e-06 56.2 135 29.6
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 3.2e-06 56.2 148 26.4
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 4.1e-06 55.8 138 25.4
FAN27G0955 Fragaria x ananassa HOM05D003946 ORTHO05D004485 4.1e-06 55.8 116 32.8
Glyma.15G020050 Glycine max HOM05D003946 ORTHO05D004485 4.1e-06 55.8 89 37.1
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 5.4e-06 55.5 122 31.1
Hma1.2p1_2732F.1_g327665 Hydrangea macrophylla HOM05D003946 ORTHO05D004485 5.4e-06 55.5 115 34.8
Manes.14G148900 Manihot esculenta HOM05D003946 ORTHO05D004485 5.4e-06 55.5 85 36.5
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 7.1e-06 55.1 113 29.2
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.1e-06 55.1 95 36.8
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 7.1e-06 55.1 130 27.7
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 9.2e-06 54.7 154 24.7
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 9.2e-06 54.7 122 31.1
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 9.2e-06 54.7 122 31.1
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 9.2e-06 54.7 119 28.6
RcHm_v2.0_Chr4g0405181 Rosa chinensis HOM05D003946 ORTHO05D004485 9.2e-06 54.7 107 35.5


User provided reference genes

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