Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1667.5 849 100.0
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1577.4 851 94.9
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1479.2 850 89.3
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1419.8 864 85.2
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1402.1 861 84.3
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1396.7 858 84.1
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1370.5 863 82.5
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1362.1 863 82.0
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1359.7 862 82.8
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1358.6 859 82.4
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1352.8 862 81.2
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1340.1 865 80.5
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 0.0e+00 1283.5 740 89.3
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1258.8 866 75.5
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1214.5 866 72.6
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1190.3 868 71.5
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1168.7 866 70.0
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1167.9 870 71.1
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1161.7 866 70.8
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1159.1 869 70.5
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1158.3 868 70.5
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1157.9 868 70.4
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1157.1 863 70.7
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1151.3 826 72.3
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1149.8 863 70.6
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1146.0 867 69.9
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1145.6 864 70.3
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1145.2 864 70.3
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1142.9 869 69.0
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1140.6 864 70.3
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1132.5 866 68.6
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1132.1 867 69.9
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1130.2 867 68.3
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1128.6 872 69.0
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1128.6 875 67.7
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1124.0 865 68.8
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1122.5 866 68.7
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1120.5 868 67.7
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1116.3 868 68.3
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1115.5 868 68.2
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1093.6 866 65.9
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1083.2 862 66.2
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1081.6 825 68.4
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1076.2 862 66.1
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1075.8 872 64.9
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1075.8 851 66.6
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1075.5 878 66.6
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 5.8e-312 1074.3 861 65.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 5.8e-312 1073.5 857 65.8
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 8.7e-311 1070.1 868 66.0
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.7e-309 1065.8 861 64.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 5.4e-308 1060.8 874 65.6
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 5.4e-308 1060.8 868 65.6
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 2.7e-307 1058.5 867 64.6
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.3e-306 1056.2 869 65.1
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 2.9e-306 1055.0 865 65.4
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.1e-305 1053.1 871 65.2
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 5.6e-305 1050.8 868 65.6
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.6e-304 1049.3 868 64.6
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 2.3e-303 1045.4 861 65.5
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 3.4e-302 1041.6 861 64.2
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 1.6e-299 1032.7 873 64.5
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.5e-299 1031.6 860 63.5
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.0e-298 1030.0 860 63.0
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 3.0e-298 1028.5 862 63.3
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 1.9e-297 1025.8 867 62.7
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.2e-296 1023.1 851 64.5
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.1e-296 1022.3 869 63.9
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.6e-296 1021.5 861 63.6
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 3.1e-295 1018.5 861 63.1
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 8.9e-295 1016.9 873 61.2
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 2.6e-294 1015.4 862 62.6
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 2.4e-292 1008.8 873 61.5
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 7.8e-291 1003.8 862 62.1
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.0e-290 1003.4 860 62.0
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.9e-289 999.2 862 61.1
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 1.4e-287 993.0 645 80.5
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.8e-287 992.6 907 59.5
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 8.9e-287 990.3 867 61.6
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 4.4e-286 988.0 803 64.6
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.6e-283 978.0 849 61.8
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 5.6e-281 971.1 855 60.6
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 2.4e-279 965.7 803 65.3
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.2e-277 959.1 820 62.2
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 8.4e-277 957.2 804 65.0
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.0e-271 938.3 748 68.0
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 5.8e-270 934.5 844 59.8
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 1.1e-263 913.7 803 61.1
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 8.4e-261 904.0 863 56.8
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.1e-255 887.1 862 56.7
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 4.0e-255 885.2 851 56.5
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.2e-251 873.6 864 54.2
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 3.4e-246 855.5 869 52.9
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 5.8e-246 854.7 867 52.9
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.7e-240 835.5 854 54.1
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 4.5e-230 802.0 806 56.1
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 1.0e-221 774.2 685 62.3
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 2.3e-202 709.9 754 50.4
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.1e-175 621.3 521 62.8
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 7.3e-172 608.6 728 48.4
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 3.6e-147 526.6 858 39.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 6.4e-144 515.8 431 62.9
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.2e-142 511.5 837 37.9
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 4.5e-137 493.0 837 39.1
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 2.0e-108 397.9 304 67.8
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 3.5e-105 387.1 998 31.1
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 6.0e-57 226.9 198 62.1
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 1.2e-28 132.9 100 67.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.2e-27 128.6 84 73.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 3.9e-24 117.9 65 87.7
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 2.5e-23 115.2 587 22.0
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 2.5e-18 98.6 590 23.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 2.1e-17 95.5 65 69.2
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.8e-16 92.4 63 68.3
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 2.1e-14 85.5 66 65.2
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.1e-14 85.5 56 75.0
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.1e-13 83.2 86 55.8
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.1e-13 83.2 56 69.6
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.4e-13 82.8 57 66.7
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.6e-09 69.3 51 56.9
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 4.6e-09 67.8 42 76.2
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 7.9e-09 67.0 614 22.6
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 6.7e-08 63.9 98 44.9
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 5.7e-07 60.8 32 81.2


User provided reference genes

Program Settings