Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 0.0e+00 1323.1 723 100.0
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.3e-193 680.6 755 59.3
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.0e-146 523.9 795 49.6
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.0e-122 444.1 837 44.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.7e-68 265.0 734 39.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.8e-52 210.7 292 52.1
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 6.0e-50 203.4 670 35.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 6.0e-50 203.4 658 34.7
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.3e-47 195.7 289 52.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.2e-44 184.9 418 42.8
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.1e-32 146.0 271 44.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.6e-29 134.8 422 32.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.9e-28 131.3 287 38.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 4.2e-27 127.5 308 38.0
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.5e-27 127.1 292 40.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.6e-26 125.6 218 42.7
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.6e-26 124.4 762 29.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 7.9e-26 123.2 531 30.3
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 3.0e-25 121.3 277 37.9
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.5e-24 119.0 428 29.9
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.5e-24 118.2 632 28.8
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.7e-24 117.1 236 39.8
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 7.4e-24 116.7 291 33.3
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.7e-23 115.5 837 26.2
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.2e-23 115.2 272 38.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.4e-22 112.5 519 29.1
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.4e-22 111.7 451 34.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.1e-22 111.3 461 31.0
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.9e-22 110.2 266 37.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 9.1e-22 109.8 213 43.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.8e-20 104.4 253 34.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 5.0e-20 104.0 258 36.8
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.0e-20 104.0 736 26.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.0e-20 104.0 286 33.2
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 8.5e-20 103.2 255 36.5
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.1e-19 102.8 279 35.5
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-19 102.8 299 36.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.2e-19 100.1 278 36.3
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.1e-18 98.6 299 35.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.1e-18 98.6 762 25.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.7e-18 98.2 831 25.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 3.6e-18 97.8 272 34.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.4e-17 95.9 298 35.9
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.4e-17 95.9 326 33.4
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 2.3e-17 95.1 309 33.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-17 94.7 321 32.1
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-17 94.7 281 33.5
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 6.7e-17 93.6 131 47.3
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 8.8e-17 93.2 279 35.1
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.1e-16 92.8 758 25.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.1e-16 92.8 212 37.3
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.5e-16 92.4 435 31.7
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.0e-16 92.0 310 30.6
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.3e-16 91.3 735 26.5
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 4.4e-16 90.9 461 29.9
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 5.7e-16 90.5 152 40.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 7.4e-16 90.1 274 37.2
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.7e-15 89.0 459 29.0
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-15 88.6 243 34.2
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-15 88.6 243 34.2
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.2e-15 88.6 243 34.2
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.8e-15 88.2 142 42.3
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 3.7e-15 87.8 270 35.2
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.7e-15 87.8 448 28.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 4.8e-15 87.4 211 34.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 4.8e-15 87.4 236 35.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.3e-15 87.0 802 26.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.1e-14 86.3 429 26.1
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-14 85.9 292 32.2
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.4e-14 85.9 292 32.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-14 85.1 367 33.0
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 2.4e-14 85.1 767 25.6
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 3.1e-14 84.7 471 26.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.1e-14 84.7 459 27.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.1e-14 84.3 317 30.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.1e-14 84.3 303 31.0
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 4.1e-14 84.3 756 25.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.1e-14 84.3 463 29.2
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.3e-14 84.0 820 24.9
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.0e-14 83.6 505 27.5
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.0e-14 83.6 300 29.7
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 9.1e-14 83.2 483 26.5
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.5e-13 82.4 133 44.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.5e-13 82.4 797 24.5
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.0e-13 82.0 790 24.6
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.6e-13 81.6 284 31.0
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.6e-13 81.6 311 28.3
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 3.5e-13 81.3 525 26.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.5e-13 80.9 539 26.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 7.7e-13 80.1 313 29.7
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.0e-12 79.7 189 39.2
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-12 79.3 760 22.6
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.7e-12 79.0 459 28.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.7e-12 79.0 176 38.1
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 2.2e-12 78.6 475 25.5
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 3.8e-12 77.8 203 34.0
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 3.8e-12 77.8 244 31.6
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 5.0e-12 77.4 751 24.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 5.0e-12 77.4 309 31.1
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.0e-12 77.4 134 41.0
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 5.0e-12 77.4 264 33.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 6.5e-12 77.0 221 33.5
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 8.5e-12 76.6 282 30.1
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 8.5e-12 76.6 745 25.1
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 1.1e-11 76.3 173 34.1
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-11 76.3 781 25.2
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-11 75.5 754 23.9
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.2e-11 74.3 477 24.7
Ca_26148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.4e-11 73.2 173 37.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 9.4e-11 73.2 247 32.4
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-10 72.0 262 33.2
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-10 72.0 192 33.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.1e-10 72.0 192 33.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 2.7e-10 71.6 139 38.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.6e-10 71.2 107 40.2
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 4.7e-10 70.9 614 24.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 6.1e-10 70.5 139 37.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 6.1e-10 70.5 318 27.4
Ca_27198_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.3e-09 68.6 135 37.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-09 68.2 594 23.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 6.7e-09 67.0 629 24.5
Ca_21034_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 8.8e-09 66.6 118 44.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 8.8e-09 66.6 750 24.3
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-08 66.2 527 25.8
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 2.0e-08 65.5 85 47.1
Ca_03148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.0e-08 65.5 100 46.0
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.3e-08 64.7 90 45.6
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.7e-08 63.9 105 41.9
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 5.7e-08 63.9 176 32.4
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 7.4e-08 63.5 289 27.0
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.4e-08 63.5 572 25.9
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 7.4e-08 63.5 210 28.6
Ca_03472_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.7e-07 62.4 172 37.2
Ca_23029_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.7e-07 62.4 137 40.9
Ca_23031_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.7e-07 62.4 137 40.9
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.7e-07 62.4 45 62.2
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.7e-07 62.4 39 74.4
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 2.2e-07 62.0 136 36.8
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 2.8e-07 61.6 210 30.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 6.3e-07 60.5 513 25.7
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.4e-06 59.3 318 28.9
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.8e-06 58.9 129 35.7
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 1.8e-06 58.9 44 68.2
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.1e-06 58.2 267 30.7
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.1e-06 58.2 35 77.1
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.3e-06 57.4 40 67.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 5.3e-06 57.4 775 23.1
Ca_11726_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.0e-06 57.0 109 36.7
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 7.0e-06 57.0 37 70.3
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 7.0e-06 57.0 37 70.3
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 7.0e-06 57.0 139 33.1
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 9.1e-06 56.6 40 65.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 9.1e-06 56.6 502 22.7
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 9.1e-06 56.6 44 59.1


User provided reference genes

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