Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.4e-75 285.4 144 100.0
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 5.4e-67 257.7 144 91.7
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 1.2e-66 256.5 144 90.3
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 1.9e-64 249.2 144 88.9
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 8.9e-54 213.8 140 75.7
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 8.3e-52 207.2 145 73.8
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 9.2e-51 203.8 149 73.2
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 8.6e-49 197.2 148 74.3
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 1.1e-48 196.8 141 73.0
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 1.9e-48 196.1 149 68.5
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 3.4e-45 185.3 146 67.1
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 5.8e-45 184.5 140 67.1
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 3.2e-43 178.7 141 69.5
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 2.5e-40 169.1 139 69.8
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 4.7e-39 164.9 142 63.4
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 1.8e-38 162.9 147 66.7
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 4.0e-38 161.8 148 63.5
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 8.9e-38 160.6 150 65.3
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 8.9e-38 160.6 150 65.3
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 2.2e-36 156.0 135 66.7
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 2.9e-36 155.6 142 63.4
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 9.5e-32 140.6 144 59.0
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 3.6e-31 138.7 130 60.8
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 9.9e-21 104.0 139 49.6
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 4.9e-20 101.7 137 45.3
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 2.4e-19 99.4 119 52.1
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 9.3e-19 97.4 131 49.6
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 2.1e-18 96.3 130 46.9
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 6.0e-18 94.7 133 49.6
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 3.9e-17 92.0 137 45.3
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 5.1e-17 91.7 136 44.9
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 8.7e-17 90.9 136 45.6
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.5e-16 90.1 158 44.3
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 1.9e-16 89.7 144 47.2
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 1.9e-16 89.7 129 50.4
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 3.3e-16 89.0 126 46.0
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 4.3e-16 88.6 137 47.4
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 5.6e-16 88.2 136 45.6
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 9.6e-16 87.4 133 48.1
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 2.1e-15 86.3 130 48.5
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.1e-15 86.3 130 48.5
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 2.1e-15 86.3 117 44.4
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 3.6e-15 85.5 129 45.7
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 4.8e-15 85.1 114 45.6
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 3.1e-14 82.4 140 47.1
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 4.0e-14 82.0 130 40.8
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.2e-13 80.5 132 47.0
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.2e-13 80.5 132 42.4
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 3.4e-13 79.0 111 49.5
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 4.5e-13 78.6 118 45.8
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 4.5e-13 78.6 142 42.3
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 7.6e-13 77.8 124 45.2
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 9.9e-13 77.4 124 45.2
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 2.2e-12 76.3 127 42.5
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 2.9e-12 75.9 125 42.4
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 2.9e-12 75.9 125 42.4
arahy.Tifrunner.gnm1.ann1.KD7YUX Arachis hypogaea HOM05D007735 ORTHO05D009638 4.9e-12 75.1 135 51.1
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 8.4e-12 74.3 137 40.1
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 8.4e-12 74.3 131 37.4
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 1.4e-11 73.6 112 46.4
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 1.4e-11 73.6 128 37.5
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 1.9e-11 73.2 131 42.0
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 2.4e-11 72.8 133 39.8
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 2.1e-10 69.7 113 43.4
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 3.5e-10 68.9 132 41.7
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 7.9e-10 67.8 130 39.2
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 7.9e-10 67.8 130 39.2
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 7.9e-10 67.8 127 38.6
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 1.0e-09 67.4 108 45.4
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.3e-09 67.0 122 43.4
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.3e-09 67.0 133 37.6
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 1.3e-09 67.0 135 39.3
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 3.0e-09 65.9 145 36.6
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 3.9e-09 65.5 135 42.2
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 5.1e-09 65.1 130 38.5
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 8.7e-09 64.3 122 36.9
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.5e-08 63.5 154 31.2
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.5e-08 63.5 106 39.6
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 5.6e-08 61.6 128 39.8
HPP92_018900 Vanilla planifolia HOM05D026889 ORTHO05D009638 5.6e-08 61.6 123 43.1
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.3e-07 60.5 124 35.5
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.3e-07 60.5 124 35.5
HPP92_018844 Vanilla planifolia HOM05D026889 ORTHO05D009638 1.3e-07 60.5 123 43.1
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 4.8e-07 58.5 129 38.0
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 6.2e-07 58.2 104 41.3
Nitab4.5_0000235g0170 Nicotiana tabacum HOM05D007735 ORTHO05D009638 6.2e-07 58.2 80 43.8
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 1.1e-06 57.4 108 41.7
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 2.4e-06 56.2 97 41.2


User provided reference genes

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