Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 5.4e-119 431.0 219 100.0
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 4.3e-108 394.8 219 92.7
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 4.0e-98 361.7 219 85.4
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 8.4e-88 327.4 220 80.0
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 9.3e-87 323.9 219 77.6
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 1.7e-85 319.7 219 76.7
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 4.9e-80 301.6 220 72.3
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 6.0e-78 294.7 246 65.9
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 1.3e-69 266.9 220 69.5
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 2.4e-66 256.1 219 67.6
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 9.0e-58 227.6 218 59.6
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 7.6e-57 224.6 221 59.7
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 2.7e-54 216.1 221 60.2
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 1.8e-53 213.4 221 59.3
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 3.0e-53 212.6 218 57.3
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 6.7e-53 211.5 221 58.4
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.1e-52 210.7 221 59.7
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 1.9e-52 209.9 146 76.7
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 3.3e-52 209.1 233 57.1
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 4.3e-52 208.8 205 57.6
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 9.7e-52 207.6 218 57.3
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.3e-51 207.2 177 63.8
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 6.3e-51 204.9 122 85.2
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 8.2e-51 204.5 174 65.5
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 2.4e-50 203.0 195 59.5
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 6.9e-50 201.4 176 65.3
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 6.9e-50 201.4 122 84.4
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 6.9e-50 201.4 122 84.4
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 9.1e-50 201.1 118 84.7
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.5e-49 200.3 178 61.8
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 2.6e-49 199.5 225 54.2
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 5.9e-49 198.4 224 53.6
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 1.0e-48 197.6 183 61.2
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 1.0e-48 197.6 162 69.8
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 1.0e-48 197.6 118 84.7
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 1.7e-48 196.8 146 71.2
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 1.7e-48 196.8 194 59.8
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 2.2e-48 196.4 175 60.6
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 2.2e-48 196.4 159 66.0
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 2.2e-48 196.4 130 77.7
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 2.9e-48 196.1 164 67.1
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 3.8e-48 195.7 183 61.2
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.1e-47 194.1 182 59.3
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 3.2e-47 192.6 115 83.5
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 4.2e-47 192.2 122 81.1
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 5.5e-47 191.8 224 53.6
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 9.4e-47 191.0 133 72.2
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 9.4e-47 191.0 133 72.2
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 1.6e-46 190.3 165 63.6
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 1.6e-46 190.3 116 82.8
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 2.7e-46 189.5 105 91.4
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 4.6e-46 188.7 221 51.6
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 4.6e-46 188.7 224 53.6
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 6.1e-46 188.3 130 76.2
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 6.1e-46 188.3 149 70.5
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.0e-45 187.6 124 75.0
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 1.4e-45 187.2 211 52.6
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 1.8e-45 186.8 166 61.4
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.8e-45 186.8 149 68.5
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 3.0e-45 186.0 125 78.4
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 3.0e-45 186.0 120 80.0
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 3.0e-45 186.0 112 84.8
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 3.9e-45 185.7 173 64.2
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 8.8e-45 184.5 141 69.5
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 8.8e-45 184.5 120 80.0
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.1e-44 184.1 151 62.9
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 1.5e-44 183.7 114 80.7
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 1.5e-44 183.7 117 80.3
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 2.0e-44 183.3 141 70.9
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 3.3e-44 182.6 141 70.9
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 5.7e-44 181.8 174 57.5
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 5.7e-44 181.8 140 70.0
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 7.4e-44 181.4 197 54.8
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.3e-43 180.6 183 56.8
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.2e-43 179.9 120 75.8
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.2e-43 179.9 103 85.4
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 2.8e-43 179.5 120 75.8
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 2.8e-43 179.5 140 68.6
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 2.8e-43 179.5 140 69.3
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 2.8e-43 179.5 140 68.6
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 2.8e-43 179.5 140 68.6
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 2.8e-43 179.5 103 87.4
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 3.7e-43 179.1 140 67.9
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 4.8e-43 178.7 180 57.8
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 4.8e-43 178.7 104 83.7
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 6.3e-43 178.3 129 72.9
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.1e-42 177.6 142 66.2
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.1e-42 177.6 107 86.0
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.4e-42 177.2 144 67.4
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 1.8e-42 176.8 220 50.0
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 2.4e-42 176.4 144 65.3
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 2.4e-42 176.4 131 69.5
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 3.1e-42 176.0 145 68.3
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 4.1e-42 175.6 140 67.9
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 4.1e-42 175.6 100 89.0
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.2e-40 169.9 103 82.5
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 5.0e-40 168.7 138 67.4
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 6.5e-40 168.3 133 66.9
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 8.5e-40 167.9 133 66.9
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 2.1e-38 163.3 102 80.4
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 2.3e-37 159.8 114 71.1
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 8.2e-35 151.4 146 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 5.9e-33 145.2 107 67.3
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 7.7e-33 144.8 103 69.9
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.3e-32 144.1 103 68.0
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 2.7e-30 136.3 88 78.4
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 1.7e-27 127.1 98 62.2
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 3.7e-27 125.9 70 85.7
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 4.8e-27 125.6 78 80.8
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 7.7e-25 118.2 158 49.4
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 1.8e-18 97.1 93 50.5
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.6e-17 94.0 62 79.0
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 5.9e-17 92.0 55 83.6
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 8.5e-16 88.2 74 55.4
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 1.9e-15 87.0 44 88.6
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.7e-11 73.9 110 42.7
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 5.4e-10 68.9 44 72.7


User provided reference genes

Program Settings