Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 4.3e-191 671.4 394 100.0
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.2e-162 573.9 385 91.4
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 6.0e-161 571.2 389 86.9
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.2e-146 522.3 374 85.3
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.2e-130 468.8 404 69.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.7e-126 455.7 403 68.0
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-119 433.7 404 63.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.1e-117 427.6 391 62.9
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.9e-117 424.9 398 63.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.5e-116 423.7 399 62.4
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 7.7e-116 421.4 400 61.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 6.5e-115 418.3 388 61.6
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.0e-112 409.5 395 60.0
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.4e-111 405.6 369 65.0
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.3e-110 404.1 405 58.8
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 2.8e-110 402.9 396 61.9
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.4e-109 400.6 398 61.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.4e-109 399.8 412 58.3
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 2.4e-109 399.8 409 58.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.9e-109 398.3 376 62.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.9e-109 398.3 376 62.2
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.0e-108 396.7 395 59.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-108 396.4 376 62.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.6e-108 396.4 395 60.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.9e-107 392.9 410 57.3
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.8e-107 392.5 384 59.4
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.5e-107 391.3 410 57.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.1e-105 386.7 422 56.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.6e-105 386.0 450 62.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 4.7e-105 385.6 387 59.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-105 385.6 395 58.5
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 6.1e-105 385.2 380 60.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 6.1e-105 385.2 386 59.6
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.4e-104 384.0 471 51.8
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.1e-103 380.9 391 59.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.3e-103 379.4 398 58.3
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 7.4e-103 378.3 360 61.9
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 7.4e-103 378.3 431 60.6
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 4.8e-102 375.6 405 59.8
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 4.8e-102 375.6 396 58.1
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 8.2e-102 374.8 410 55.9
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.2e-102 374.8 410 55.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.4e-101 373.2 376 59.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.1e-97 360.1 414 54.6
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.1e-97 360.1 406 54.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-96 357.5 395 56.2
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.0e-96 355.9 399 57.6
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 5.2e-96 355.5 406 55.9
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-95 354.4 274 69.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.5e-95 354.0 401 57.9
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 3.3e-95 352.8 394 55.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.3e-94 350.9 386 55.4
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 6.3e-94 348.6 403 55.3
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 8.2e-94 348.2 410 52.4
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 5.3e-93 345.5 403 54.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.1e-93 344.7 402 53.0
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.5e-92 342.8 397 52.9
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.1e-90 337.8 397 56.4
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-90 337.8 399 54.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 3.2e-90 336.3 471 55.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.6e-89 334.0 411 53.0
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.6e-89 334.0 397 56.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 2.1e-89 333.6 388 56.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.6e-89 332.8 422 52.1
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 8.0e-89 331.6 401 52.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.0e-88 331.3 420 52.6
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.3e-88 330.1 374 54.5
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 3.0e-88 329.7 462 49.1
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 4.4e-87 325.9 418 51.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 7.5e-87 325.1 268 65.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 2.8e-86 323.2 278 64.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.8e-86 323.2 268 65.3
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 6.3e-86 322.0 268 64.9
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.4e-85 320.1 405 52.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 2.4e-85 320.1 305 64.3
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 7.0e-85 318.5 399 51.1
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.2e-84 317.8 466 47.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-84 317.8 387 51.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.0e-84 317.0 397 51.4
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 8.6e-83 311.6 448 49.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.5e-82 310.8 403 49.1
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.2e-81 307.8 355 52.1
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.0e-80 304.7 438 50.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 4.9e-78 295.8 361 53.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.8e-77 293.9 397 48.9
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 3.1e-77 293.1 417 46.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 7.0e-77 292.0 359 51.3
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.0e-77 292.0 415 48.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.5e-76 289.7 375 52.0
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 4.5e-76 289.3 474 44.5
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.0e-75 288.1 379 51.2
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.8e-75 286.2 368 52.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.5e-74 284.3 399 49.4
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.5e-74 284.3 424 46.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 9.5e-74 281.6 410 46.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.1e-73 280.4 414 47.3
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.1e-73 278.9 389 49.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.0e-72 278.1 447 46.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-72 276.6 415 48.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 5.2e-72 275.8 407 47.9
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 5.8e-71 272.3 446 47.8
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 3.7e-70 269.6 442 45.2
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.7e-70 269.6 383 48.8
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 4.9e-70 269.2 392 48.0
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 4.9e-70 269.2 392 48.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 6.4e-70 268.9 453 43.7
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 8.3e-70 268.5 442 45.0
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 3.5e-68 263.1 391 46.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.5e-68 263.1 460 43.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 6.0e-68 262.3 343 52.2
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.9e-66 257.3 372 47.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.2e-65 254.6 444 43.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.0e-65 251.9 350 46.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 6.8e-64 248.8 362 47.5
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.9e-64 248.4 372 46.0
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.8e-63 245.7 312 56.4
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 2.9e-62 243.4 416 44.5
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.0e-59 235.0 400 42.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.3e-58 229.9 378 49.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.6e-57 226.5 457 41.6
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.5e-55 221.1 287 51.2
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 4.9e-54 216.1 259 52.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.5e-52 209.9 467 36.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.7e-51 207.6 129 84.5
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-49 200.7 393 41.7
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.2e-45 186.8 382 40.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.9e-42 177.6 334 52.7
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.9e-34 151.0 390 37.7
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 6.2e-33 146.0 221 47.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.8e-32 144.4 157 54.8
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 3.3e-26 123.6 76 82.9
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.4e-24 117.5 97 64.9
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.5e-23 113.2 247 39.7
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 9.9e-23 112.1 154 43.5
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.2e-21 107.1 82 70.7
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 7.1e-21 105.9 67 76.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-20 105.1 67 74.6
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 6.0e-20 102.8 126 52.4
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.9e-20 102.4 66 78.8
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-19 101.3 67 71.6
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.4e-18 95.9 62 69.4
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 6.9e-16 89.4 97 53.6
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.5e-15 88.2 172 43.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 3.4e-15 87.0 372 30.6
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.8e-15 86.3 58 69.0
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.0e-12 76.3 194 36.6
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-06 58.9 53 58.5
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.3e-06 58.5 97 44.3
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-06 57.4 53 56.6
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.8e-06 57.0 53 56.6
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.5e-06 56.2 53 54.7


User provided reference genes

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