Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.5e-222 775.8 366 100.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.8e-212 742.3 366 95.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.5e-209 730.7 366 94.0
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.1e-204 716.5 363 91.7
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.8e-186 654.8 357 86.3
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.5e-185 652.1 364 84.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 5.5e-185 651.0 365 82.5
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 7.5e-182 640.6 363 82.6
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.4e-175 619.8 362 80.7
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 8.6e-170 600.5 370 77.3
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.9e-163 577.8 366 74.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.3e-162 575.9 365 73.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-161 573.2 366 74.0
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-161 573.2 366 74.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.2e-160 567.8 366 71.9
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.8e-159 566.2 364 72.3
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 3.1e-159 565.5 358 72.3
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 3.1e-159 565.5 365 73.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.0e-159 565.1 358 72.3
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.2e-158 563.5 368 71.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.2e-158 563.5 358 72.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-158 562.8 358 72.1
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-158 562.8 358 72.1
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 4.4e-158 561.6 354 72.9
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.4e-158 561.6 365 70.4
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 5.8e-158 561.2 365 70.4
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 9.8e-158 560.5 360 70.8
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.3e-157 560.1 358 72.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.9e-157 558.9 345 73.3
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.9e-157 558.9 361 70.4
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 8.3e-157 557.4 358 70.9
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 7.0e-156 554.3 365 70.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.2e-155 553.5 366 69.1
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.2e-155 553.5 365 68.5
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.3e-154 550.1 352 71.3
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 6.6e-154 547.7 343 71.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 4.3e-153 545.0 362 68.2
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-152 542.3 362 68.8
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.8e-152 542.3 364 67.9
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.6e-152 542.0 364 68.1
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.1e-151 540.4 359 68.5
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.1e-151 538.9 364 67.6
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 4.4e-150 535.0 364 66.5
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.3e-149 533.5 359 66.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.3e-149 533.5 365 67.4
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.2e-149 532.7 364 66.8
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.9e-149 532.3 364 66.2
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.9e-149 532.3 350 70.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.9e-149 532.3 364 67.3
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.7e-149 531.9 364 66.8
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.7e-149 531.9 364 66.8
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 8.3e-149 530.8 363 66.7
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.4e-148 529.3 357 68.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.1e-148 528.5 363 67.5
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 5.4e-148 528.1 367 68.4
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 7.1e-148 527.7 311 76.5
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 9.2e-148 527.3 364 66.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.2e-147 526.9 347 69.2
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.6e-147 526.6 357 65.5
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-146 523.1 363 66.4
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 2.3e-146 522.7 364 65.4
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.3e-145 518.8 346 67.1
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.2e-144 516.9 361 65.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.6e-144 515.4 338 69.5
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-143 513.5 324 71.3
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-143 513.1 324 71.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.0e-143 511.9 358 63.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.2e-142 510.4 358 67.0
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-142 510.4 323 70.9
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.5e-142 510.0 312 71.8
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.0e-142 509.6 345 64.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.0e-142 509.6 358 64.8
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.6e-142 509.2 364 63.5
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.4e-142 508.4 363 65.0
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 9.9e-142 507.3 363 65.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 9.9e-142 507.3 358 63.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.3e-141 506.9 359 66.6
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.3e-141 506.9 359 63.0
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.7e-141 505.4 370 61.9
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 3.7e-141 505.4 347 65.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.9e-141 505.0 358 64.5
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.1e-140 503.8 360 63.3
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.4e-140 503.4 358 64.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.4e-140 503.4 359 62.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.2e-140 502.3 347 66.9
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.2e-140 502.3 453 53.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.1e-140 501.9 345 63.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.7e-139 499.2 358 63.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.0e-138 497.3 341 66.6
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.3e-138 496.9 342 66.1
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.7e-138 496.5 365 64.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.7e-138 496.5 359 62.1
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.1e-137 493.8 453 54.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.5e-137 493.4 346 64.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.7e-136 488.4 366 63.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.1e-135 485.7 366 63.4
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 5.2e-135 485.0 365 61.1
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.6e-134 482.6 395 58.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.9e-133 478.4 366 60.7
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 361 59.6
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.6e-129 464.9 344 60.5
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 7.3e-129 464.5 360 61.1
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 8.1e-128 461.1 268 79.5
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.8e-127 459.9 336 63.1
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.1e-127 459.1 390 58.2
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.0e-127 458.8 346 59.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 3.4e-126 455.7 358 62.0
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 2.2e-125 453.0 364 59.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 5.4e-124 448.4 315 65.1
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 4.6e-123 445.3 280 71.4
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 6.0e-123 444.9 280 71.4
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 3.9e-122 442.2 280 71.1
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.1e-120 436.4 269 72.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 8.4e-117 424.5 363 54.8
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.2e-110 404.1 341 56.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.3e-104 381.7 266 62.8
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-103 380.9 225 75.6
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.9e-103 378.3 245 70.2
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-100 370.9 322 57.5
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.9e-100 370.2 192 89.6
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.6e-99 367.1 286 55.6
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-96 357.5 205 78.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.4e-95 353.2 233 67.0
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.9e-92 343.6 335 49.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.8e-90 337.0 205 74.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.8e-87 327.0 259 57.5
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.7e-85 320.5 217 65.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.9e-85 319.7 327 48.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-84 317.8 299 52.5
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-83 314.3 364 44.5
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 7.9e-83 311.6 353 45.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.6e-78 297.4 317 45.4
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.9e-77 293.1 184 73.4
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.7e-75 286.6 201 65.7
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.0e-74 284.6 209 64.1
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-73 280.8 158 84.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.0e-62 243.8 155 74.2
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 3.8e-61 239.6 239 51.0
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.1e-43 180.6 145 57.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.0e-37 160.2 107 73.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 7.3e-36 155.6 242 38.4
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.2e-30 138.3 100 67.0
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.6e-30 137.9 109 63.3
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 3.5e-22 110.2 101 54.5
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.3e-21 107.5 101 46.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-10 72.0 117 29.9
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 4.9e-08 63.2 46 63.0


User provided reference genes

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