Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 4.3e-254 880.9 482 100.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 9.2e-172 607.4 508 69.9
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.4e-164 583.6 570 64.2
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.6e-160 568.9 542 65.9
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.2e-155 553.9 519 65.9
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 8.7e-146 521.2 502 65.7
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 5.3e-143 511.9 521 63.1
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.7e-141 506.9 522 62.3
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 3.0e-138 496.1 514 59.9
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.1e-135 487.6 513 62.8
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.2e-123 447.6 489 59.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.5e-110 402.9 492 55.9
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 5.9e-110 402.1 524 51.7
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 1.5e-105 387.5 492 54.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.6e-105 386.7 505 51.1
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 8.5e-101 371.7 513 51.5
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.2e-100 369.4 504 52.2
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 4.2e-100 369.4 496 52.8
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 9.4e-100 368.2 488 54.1
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.7e-99 366.7 498 53.6
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.5e-97 360.9 501 53.1
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.5e-97 358.6 412 55.1
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.7e-96 357.5 440 53.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.3e-96 355.5 510 50.8
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.4e-95 354.4 492 53.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 3.1e-95 353.2 478 54.4
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.2e-94 351.3 508 48.8
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.0e-94 350.5 500 51.4
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 7.7e-94 348.6 424 54.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.0e-93 348.2 496 54.4
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 3.8e-93 346.3 414 54.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 1.5e-92 344.4 504 50.8
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.5e-92 343.6 500 50.4
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 4.2e-92 342.8 528 48.5
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 2.1e-91 340.5 475 52.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.1e-91 340.5 443 51.7
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.0e-90 338.2 499 50.5
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 3.0e-90 336.7 503 51.1
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.2e-90 335.9 493 50.7
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 6.8e-90 335.5 520 49.8
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 2.0e-89 334.0 532 48.7
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.0e-89 334.0 506 49.0
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 7.5e-89 332.0 323 61.9
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 7.5e-89 332.0 378 50.8
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 2.8e-88 330.1 509 51.7
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 2.4e-87 327.0 363 57.6
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.1e-87 326.6 419 52.3
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 9.1e-87 325.1 419 51.6
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.6e-86 324.3 411 54.5
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.0e-86 323.9 500 48.2
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.0e-85 321.6 516 48.6
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 1.3e-85 321.2 407 54.1
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 2.9e-85 320.1 507 47.9
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 5.0e-85 319.3 489 49.5
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-84 318.2 331 57.7
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.9e-84 317.4 492 48.4
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.2e-84 316.2 501 49.1
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 7.2e-84 315.5 472 52.1
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.0e-83 312.0 508 48.4
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.5e-81 307.8 432 49.5
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 4.4e-81 306.2 532 43.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.2e-80 303.9 485 49.9
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 6.3e-80 302.4 198 74.2
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.2e-79 300.1 335 56.7
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 4.1e-79 299.7 362 55.2
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.0e-78 297.4 515 46.4
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 1.7e-77 294.3 477 47.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 2.9e-77 293.5 423 47.3
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 5.6e-76 289.3 512 44.7
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.8e-75 287.0 430 45.1
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 3.6e-75 286.6 442 47.1
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.0e-74 285.0 510 45.9
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-72 278.1 430 43.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.2e-71 273.5 382 46.3
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 4.1e-71 273.1 491 45.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-70 271.6 402 45.0
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.6e-70 271.2 436 45.9
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.0e-70 270.8 411 47.4
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.7e-70 270.4 333 52.6
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 4.6e-70 269.6 389 47.8
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.3e-69 268.1 555 42.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.9e-69 266.5 413 46.2
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 5.0e-69 266.2 551 40.8
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.0e-69 266.2 390 48.2
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 6.6e-69 265.8 523 41.5
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 8.0e-67 258.8 449 43.7
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.4e-66 258.1 299 51.2
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.1e-66 256.9 555 39.5
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 4.0e-66 256.5 558 42.7
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 4.0e-66 256.5 547 40.8
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 4.0e-66 256.5 471 42.5
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.2e-65 255.0 205 61.0
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 5.8e-65 252.7 328 52.1
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 5.8e-65 252.7 378 44.7
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.7e-64 251.1 429 44.1
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.2e-64 250.8 427 45.4
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.9e-64 250.4 387 47.3
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 4.9e-64 249.6 502 37.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 6.4e-64 249.2 445 38.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.4e-63 248.1 325 48.6
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 5.4e-63 246.1 177 68.9
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 1.3e-61 241.5 410 47.1
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.7e-61 241.1 395 42.8
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 3.0e-61 240.4 395 42.8
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 6.6e-61 239.2 171 82.5
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.1e-58 230.3 244 52.5
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 5.8e-57 226.1 399 49.4
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 5.8e-57 226.1 674 35.8
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.9e-48 197.2 165 60.0
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-44 184.9 177 54.2
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.5e-44 184.9 177 54.2
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.8e-42 177.9 139 64.0
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.3e-37 161.0 106 68.9
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.5e-36 158.3 364 42.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 5.3e-34 149.8 90 74.4
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-31 142.1 139 55.4
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.9e-30 136.0 330 37.3
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.9e-29 133.7 91 69.2
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.5e-23 114.4 166 37.3
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 5.5e-23 113.2 167 37.7
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.0e-21 109.0 190 33.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.7e-20 103.2 64 73.4
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.3e-19 102.1 62 80.6
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 6.2e-19 99.8 107 52.3
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 3.4e-17 94.0 62 71.0
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.5e-16 89.7 63 69.8
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.9e-15 88.2 82 48.8
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.7e-13 79.7 248 34.3
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.3e-11 75.5 289 35.6
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 1.6e-06 58.5 72 34.7


User provided reference genes

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