Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.7e-140 502.3 311 100.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.8e-115 419.9 311 84.2
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 6.7e-99 364.8 315 78.1
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.2e-89 333.2 332 67.8
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.1e-84 316.6 327 69.7
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 3.4e-82 309.3 341 68.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 7.2e-77 291.6 322 64.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 9.4e-77 291.2 292 70.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 5.7e-74 282.0 324 61.7
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.7e-73 280.4 327 61.8
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 6.3e-73 278.5 311 56.3
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.1e-72 277.7 326 55.8
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.8e-72 276.9 319 61.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.4e-72 276.6 333 67.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 3.5e-71 272.7 307 56.7
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 5.0e-70 268.9 335 66.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 6.6e-70 268.5 317 58.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 9.5e-69 264.6 321 58.9
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.6e-68 263.8 336 62.2
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.0e-67 261.2 277 58.5
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 4.0e-67 259.2 289 60.9
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.4e-66 255.8 324 55.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 5.7e-66 255.4 319 59.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 9.8e-66 254.6 321 58.3
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.9e-65 252.3 345 55.1
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.4e-64 250.8 336 57.7
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 2.4e-64 250.0 323 60.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.2e-63 247.7 338 55.9
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-63 247.3 310 57.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.7e-63 246.5 318 60.4
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-62 244.2 310 56.8
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.5e-61 240.0 343 47.2
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 4.3e-61 239.2 313 57.5
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 9.5e-61 238.0 331 49.8
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.2e-60 237.7 356 46.6
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.6e-60 237.3 360 58.3
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.6e-60 237.3 311 52.4
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-60 236.9 345 55.9
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 3.6e-60 236.1 326 54.3
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-59 234.6 332 57.2
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-59 234.6 332 57.2
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.3e-59 233.4 327 58.4
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.2e-58 231.1 316 55.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.2e-58 231.1 324 53.4
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.5e-58 230.7 312 57.7
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.0e-58 230.3 335 48.1
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 3.4e-58 229.6 316 52.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.4e-58 229.6 329 60.5
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 3.4e-58 229.6 335 47.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.8e-58 228.8 349 51.3
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.8e-58 228.8 323 58.2
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 7.5e-58 228.4 321 48.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 7.5e-58 228.4 318 53.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-57 227.6 299 62.2
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.7e-57 227.3 294 48.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.3e-57 224.9 296 58.1
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.1e-56 224.6 306 47.1
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.9e-56 223.8 345 47.5
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.4e-56 223.4 327 45.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.1e-56 222.6 323 57.0
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 4.1e-56 222.6 311 47.3
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.2e-55 221.1 283 60.1
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.7e-55 219.9 318 58.8
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 7.8e-55 218.4 340 56.2
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.0e-54 218.0 324 54.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.0e-54 218.0 321 56.1
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-54 217.6 309 55.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.3e-54 217.6 324 54.0
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.7e-54 217.2 341 51.6
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 3.9e-54 216.1 349 53.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 5.0e-54 215.7 261 59.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 6.6e-54 215.3 339 52.8
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 6.6e-54 215.3 332 54.8
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.1e-53 214.5 320 52.5
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.1e-53 214.5 305 48.5
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-53 213.4 334 51.2
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.5e-53 213.4 338 50.0
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-52 210.7 326 43.6
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.1e-52 210.3 326 54.3
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.1e-52 210.3 326 54.3
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.1e-52 210.3 326 54.3
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.1e-52 210.3 297 44.1
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.1e-52 210.3 333 50.5
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.8e-52 209.9 327 52.0
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-52 209.9 335 47.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.6e-52 209.5 320 54.7
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 6.2e-52 208.8 329 50.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.2e-52 208.8 317 45.7
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-51 208.0 332 49.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.4e-51 207.6 337 48.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.8e-51 207.2 320 55.9
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.3e-51 206.8 339 51.3
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 5.2e-51 205.7 313 55.0
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.8e-51 205.3 305 45.9
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 6.8e-51 205.3 297 52.9
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-50 204.1 280 53.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.0e-50 203.8 289 55.4
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 3.4e-50 203.0 271 57.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.4e-50 203.0 326 49.1
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.4e-50 202.6 309 52.8
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.5e-50 201.8 309 53.1
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 7.5e-50 201.8 207 56.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 6.4e-49 198.7 312 42.0
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-48 197.6 299 51.5
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-48 197.2 311 47.3
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 3.2e-48 196.4 343 53.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 7.1e-48 195.3 333 50.8
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.7e-47 193.4 315 47.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.5e-47 193.0 336 50.3
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.3e-46 191.0 321 53.9
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.6e-44 183.0 219 65.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.7e-44 182.6 328 52.1
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.1e-43 179.9 327 52.0
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.0e-43 179.5 332 48.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.8e-43 178.7 276 50.0
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 5.8e-42 175.6 390 41.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.3e-41 174.5 266 53.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.3e-41 174.5 398 39.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.7e-41 174.1 258 48.4
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 8.3e-41 171.8 269 48.3
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.2e-40 169.9 264 50.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 5.4e-40 169.1 277 51.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 7.1e-40 168.7 241 55.2
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 9.2e-40 168.3 320 49.7
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.7e-38 164.1 331 41.1
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.5e-37 161.0 304 45.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-36 157.5 277 43.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-35 154.1 297 51.5
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.8e-35 152.1 163 54.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.2e-34 151.4 314 44.6
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.8e-34 149.1 331 39.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.4e-32 144.4 261 38.7
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.4e-32 142.5 194 56.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 9.3e-32 141.7 208 44.7
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.2e-31 141.4 327 35.2
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-31 140.6 260 46.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 4.6e-31 139.4 322 40.7
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 6.0e-31 139.0 154 53.9
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-30 137.5 136 56.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.7e-30 137.5 297 40.1
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.0e-30 136.7 149 51.7
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.3e-29 133.3 337 41.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.8e-28 130.2 359 41.2
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-28 130.2 257 41.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.3e-27 125.9 257 49.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 9.0e-27 125.2 313 32.6
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.4e-24 117.1 156 47.4
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.1e-22 109.4 238 39.1
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.9e-21 107.5 115 54.8
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 7.3e-21 105.5 326 33.7
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.6e-20 104.4 349 38.1
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.2e-18 98.2 140 45.7
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.3e-14 84.7 335 30.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.5e-10 69.7 123 40.7
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 7.6e-10 68.9 149 36.2
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-09 68.6 92 53.3


User provided reference genes

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