Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G109733 Glycine max HOM05D004492 ORTHO05D005602 1.2e-97 359.8 177 100.0
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 4.5e-76 288.1 173 82.1
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 7.8e-76 287.3 171 82.5
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 1.9e-74 282.7 171 80.7
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 9.5e-74 280.4 173 79.8
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 1.2e-73 280.0 173 79.2
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 4.7e-73 278.1 175 79.4
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 1.4e-72 276.6 175 78.9
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 1.3e-70 270.0 174 77.6
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 4.9e-70 268.1 171 76.6
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 3.2e-69 265.4 167 78.4
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 2.3e-67 259.2 174 71.3
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 3.9e-67 258.5 174 72.4
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 1.1e-66 256.9 175 68.0
Cfa015974 Carpinus fangiana HOM05D004492 ORTHO05D005602 5.6e-66 254.6 174 69.0
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 1.6e-65 253.1 173 66.5
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 5.2e-64 248.1 174 67.2
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 6.8e-64 247.7 136 89.0
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 2.6e-63 245.7 170 70.6
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 3.4e-63 245.4 175 65.7
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 1.3e-62 243.4 171 67.8
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 2.9e-62 242.3 172 68.0
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 2.9e-62 242.3 172 68.0
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 3.7e-62 241.9 171 66.7
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.1e-61 240.4 174 65.5
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 1.9e-61 239.6 172 66.3
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 2.4e-61 239.2 175 65.7
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 3.2e-61 238.8 175 65.1
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 3.2e-61 238.8 171 66.7
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 7.1e-61 237.7 171 67.3
Hma1.2p1_0038F.1_g023990 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 7.1e-61 237.7 169 68.0
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 7.1e-61 237.7 171 66.7
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 3.0e-59 232.3 172 65.7
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 5.1e-59 231.5 175 65.1
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 5.1e-59 231.5 172 65.7
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 6.6e-59 231.1 176 64.8
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 2.5e-58 229.2 168 67.3
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 3.3e-58 228.8 172 63.4
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 4.3e-58 228.4 167 64.1
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 4.3e-58 228.4 172 61.6
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 9.5e-58 227.3 170 65.9
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.6e-57 226.5 175 63.4
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 2.8e-57 225.7 175 60.0
Cc10_g10520 Coffea canephora HOM05D004492 ORTHO05D005602 4.7e-57 224.9 171 64.3
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 4.7e-57 224.9 175 62.3
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.4e-56 223.4 172 62.2
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 1.8e-56 223.0 168 64.3
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 1.8e-56 223.0 174 62.6
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 2.3e-56 222.6 171 63.7
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 3.1e-56 222.2 170 65.3
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 3.1e-56 222.2 170 65.3
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 4.0e-56 221.9 170 67.1
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 8.9e-56 220.7 167 62.9
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 1.2e-55 220.3 167 62.3
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 1.2e-55 220.3 172 62.8
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 1.2e-55 220.3 172 63.4
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 1.3e-54 216.9 187 60.4
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 1.7e-54 216.5 171 59.1
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 2.9e-54 215.7 169 58.6
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 2.9e-54 215.7 167 62.3
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 2.9e-54 215.7 167 62.3
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 3.7e-54 215.3 167 61.1
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 4.9e-54 214.9 166 62.7
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 4.9e-54 214.9 167 62.3
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 4.9e-54 214.9 165 63.0
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 6.4e-54 214.5 172 59.9
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 6.4e-54 214.5 187 57.2
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 1.1e-53 213.8 168 60.7
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 2.4e-53 212.6 169 61.5
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 3.2e-53 212.2 167 59.9
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 5.4e-53 211.5 171 56.7
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 1.6e-52 209.9 168 60.7
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 2.1e-52 209.5 181 55.8
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 2.7e-52 209.1 167 59.9
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 3.5e-52 208.8 168 60.7
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 2.3e-51 206.1 168 59.5
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 2.3e-51 206.1 174 55.7
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 3.9e-51 205.3 169 58.6
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 4.3e-50 201.8 170 59.4
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 3.6e-49 198.7 170 58.2
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 4.7e-49 198.4 170 57.6
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 4.7e-49 198.4 257 43.6
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 5.2e-48 194.9 167 58.1
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.4e-45 186.8 173 51.4
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 5.4e-45 184.9 195 49.7
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 3.5e-44 182.2 170 54.1
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 6.6e-43 177.9 171 49.1
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 1.9e-42 176.4 171 53.8
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 2.0e-39 166.4 166 50.6
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 1.7e-38 163.3 178 50.6
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 7.1e-37 157.9 123 61.0
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 6.6e-35 151.4 165 46.7
FvH4_2g26271 Fragaria vesca HOM05D004492 ORTHO05D005602 3.6e-33 145.6 141 52.5
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 5.8e-31 138.3 164 40.2
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 7.6e-31 137.9 168 43.5
Hund27046 Selenicereus undatus HOM05D004492 ORTHO05D005602 8.4e-30 134.4 167 44.3
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 1.1e-29 134.0 179 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 5.4e-29 131.7 165 40.0
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 9.3e-29 131.0 173 43.9
FvH4_2g03781 Fragaria vesca HOM05D004492 ORTHO05D005602 1.6e-28 130.2 166 42.8
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 6.0e-28 128.3 166 43.4
Zm00001eb393760 Zea mays HOM05D004492 ORTHO05D005602 1.9e-26 123.2 122 50.0
COL.COLO4_38232 Corchorus olitorius HOM05D004492 ORTHO05D005602 7.4e-26 121.3 174 39.1
AUR62023625 Chenopodium quinoa HOM05D004492 ORTHO05D005602 3.7e-25 119.0 72 72.2
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 5.3e-24 115.2 153 41.2
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.5e-23 113.6 129 47.3
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 7.6e-23 111.3 101 54.5
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 2.2e-22 109.8 153 37.9
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 6.0e-20 101.7 159 34.0
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 2.3e-19 99.8 150 38.7
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 3.9e-19 99.0 114 43.0
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 3.3e-18 95.9 153 35.3
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 2.4e-16 89.7 102 47.1
FAN24G3351 Fragaria x ananassa HOM05D004492 ORTHO05D005602 5.3e-16 88.6 163 33.7
SEGI_10642 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 6.9e-16 88.2 68 55.9
Lj7A323T18 Lonicera japonica HOM05D004492 ORTHO05D005602 1.0e-11 74.3 49 71.4
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 1.3e-11 73.9 79 49.4
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.5e-10 69.7 161 32.3
CDE05G1456 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.8e-08 63.5 49 55.1


User provided reference genes

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