Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 9.0e-26 119.4 57 100.0
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 7.9e-22 106.3 57 93.0
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 7.9e-22 106.3 57 93.0
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 6.7e-21 103.2 56 89.3
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 1.1e-20 102.4 57 89.5
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 1.1e-20 102.4 57 87.7
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.1e-20 102.4 57 87.7
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 1.5e-20 102.1 56 87.5
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.9e-20 101.7 57 86.0
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.9e-20 101.7 57 86.0
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.5e-20 101.3 57 86.0
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.5e-20 101.3 57 86.0
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 3.3e-20 100.9 57 87.7
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 3.3e-20 100.9 57 87.7
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 4.3e-20 100.5 66 75.8
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 4.3e-20 100.5 57 87.7
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 4.3e-20 100.5 57 87.7
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 4.3e-20 100.5 57 86.0
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 5.7e-20 100.1 57 86.0
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 5.7e-20 100.1 57 86.0
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 5.7e-20 100.1 57 86.0
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 5.7e-20 100.1 57 86.0
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 7.4e-20 99.8 57 84.2
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 7.4e-20 99.8 57 86.0
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 7.4e-20 99.8 57 86.0
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 7.4e-20 99.8 56 85.7
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 9.7e-20 99.4 56 83.9
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 1.3e-19 99.0 56 83.9
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 1.3e-19 99.0 56 83.9
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 82.5
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 82.5
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 82.5
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 84.2
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 84.2
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 84.2
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 1.6e-19 98.6 57 84.2
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 2.2e-19 98.2 57 84.2
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 83.9
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 83.9
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.2e-19 98.2 57 84.2
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 82.1
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.2e-19 98.2 57 82.5
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 82.1
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 82.1
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 83.9
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 2.2e-19 98.2 57 84.2
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.2e-19 98.2 56 83.9
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 2.2e-19 98.2 57 82.5
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 2.8e-19 97.8 56 83.9
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.8e-19 97.8 56 83.9
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 2.8e-19 97.8 57 82.5
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 4.8e-19 97.1 56 82.1
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 4.8e-19 97.1 57 86.0
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 4.8e-19 97.1 57 82.5
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 4.8e-19 97.1 57 84.2
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 6.3e-19 96.7 57 82.5
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 6.3e-19 96.7 57 84.2
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 6.3e-19 96.7 57 82.5
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 6.3e-19 96.7 57 84.2
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 8.2e-19 96.3 56 82.1
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 8.2e-19 96.3 57 84.2
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 8.2e-19 96.3 56 82.1
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 8.2e-19 96.3 57 82.5
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 8.2e-19 96.3 57 82.5
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 8.2e-19 96.3 56 82.1
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 8.2e-19 96.3 57 84.2
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.1e-18 95.9 54 85.2
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 1.1e-18 95.9 57 82.5
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 1.1e-18 95.9 57 82.5
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 1.1e-18 95.9 57 82.5
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 1.1e-18 95.9 57 82.5
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 1.1e-18 95.9 56 82.1
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.4e-18 95.5 57 80.7
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 1.4e-18 95.5 57 80.7
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 1.4e-18 95.5 57 82.5
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 1.4e-18 95.5 57 80.7
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.4e-18 95.5 56 82.1
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.8e-18 95.1 57 80.7
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 2.4e-18 94.7 56 80.4
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 2.4e-18 94.7 57 78.9
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 2.4e-18 94.7 76 65.8
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 3.1e-18 94.4 56 78.6
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 3.1e-18 94.4 57 80.7
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 4.1e-18 94.0 54 83.3
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 4.1e-18 94.0 57 80.7
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 4.1e-18 94.0 57 78.9
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 5.3e-18 93.6 57 82.5
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 5.3e-18 93.6 57 80.7
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 5.3e-18 93.6 56 82.1
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.3e-18 93.6 54 83.3
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.3e-18 93.6 54 83.3
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 5.3e-18 93.6 56 82.1
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 5.3e-18 93.6 56 78.6
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 6.9e-18 93.2 57 78.9
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 6.9e-18 93.2 57 82.5
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 6.9e-18 93.2 57 82.5
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 6.9e-18 93.2 57 78.9
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 6.9e-18 93.2 56 80.4
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 9.0e-18 92.8 57 78.9
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 9.0e-18 92.8 56 76.8
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 9.0e-18 92.8 57 86.0
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 1.2e-17 92.4 57 77.2
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 2.0e-17 91.7 54 81.5
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 3.4e-17 90.9 56 80.4
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 4.5e-17 90.5 57 78.9
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 4.5e-17 90.5 56 76.8
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 5.9e-17 90.1 54 81.5
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 5.9e-17 90.1 57 77.2
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 5.9e-17 90.1 57 80.7
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 7.6e-17 89.7 54 81.5
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 1.3e-16 89.0 57 77.2
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 1.7e-16 88.6 57 75.4
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 2.9e-16 87.8 57 77.2
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.4e-15 85.5 56 73.2
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.9e-15 85.1 48 85.4
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 4.2e-15 84.0 44 84.1
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 9.3e-15 82.8 57 73.7
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 9.3e-15 82.8 41 92.7
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 9.3e-15 82.8 42 90.5
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 1.2e-14 82.4 54 68.5
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 1.2e-14 82.4 57 75.4
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 1.2e-14 82.4 42 90.5
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 2.1e-14 81.6 42 90.5
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 2.1e-14 81.6 42 90.5
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.1e-14 81.6 49 79.6
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 2.7e-14 81.3 52 71.2
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 3.6e-14 80.9 42 88.1
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 7.9e-14 79.7 41 90.2
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 1.4e-13 79.0 57 68.4
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 1.4e-13 79.0 41 85.4
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 1.8e-13 78.6 57 66.7
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 5.1e-13 77.0 55 72.7
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 5.1e-13 77.0 41 85.4
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 6.7e-13 76.6 57 66.7
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 8.8e-13 76.3 42 78.6
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.1e-12 75.9 56 64.3
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 1.1e-12 75.9 57 64.9
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 1.5e-12 75.5 42 76.2
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 1.5e-12 75.5 58 65.5
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 1.9e-12 75.1 58 65.5
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 1.9e-12 75.1 58 65.5
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.9e-12 75.1 42 78.6
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 2.5e-12 74.7 57 68.4
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.5e-12 74.7 42 78.6
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 2.5e-12 74.7 46 76.1
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 3.3e-12 74.3 41 80.5
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 3.3e-12 74.3 57 63.2
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 4.3e-12 73.9 38 89.5
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.3e-12 73.9 42 76.2
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 2.8e-11 71.2 41 75.6
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 4.8e-11 70.5 54 63.0
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 4.8e-11 70.5 54 63.0
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 4.8e-11 70.5 54 63.0
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.8e-10 68.6 37 78.4
BraA10t44831Z Brassica rapa HOM05D001755 ORTHO05D001665 3.1e-10 67.8 57 56.1
BcaB08g37202 Brassica carinata HOM05D001755 ORTHO05D001665 9.1e-10 66.2 56 55.4
BolC9t59551H Brassica oleracea HOM05D001755 ORTHO05D001665 9.1e-10 66.2 56 55.4
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 9.1e-10 66.2 42 71.4
Aa31LG3G17530 Aethionema arabicum HOM05D001755 ORTHO05D001665 2.2e-08 61.6 41 65.9
BcaB07g29738 Brassica carinata HOM05D001755 ORTHO05D001665 5.0e-08 60.5 48 56.2
CDE10G0731 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.1e-07 59.3 41 63.4
unitig_62.g23628 Utricularia gibba HOM05D001755 ORTHO05D001665 1.9e-07 58.5 42 59.5
arahy.Tifrunner.gnm1.ann1.TNQK97 Arachis hypogaea HOM05D014644 ORTHO05D001665 2.7e-06 54.7 49 53.1
unitig_699.g19865 Utricularia gibba HOM05D001755 ORTHO05D001665 3.6e-06 54.3 43 55.8


User provided reference genes

Program Settings