Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G032451 Glycine max HOM05D003563 ORTHO05D005325 3.4e-71 271.6 138 100.0
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 6.9e-64 247.3 137 89.8
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.0e-62 243.4 137 86.9
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 1.3e-62 243.0 137 87.6
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 8.8e-59 230.3 137 82.5
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 1.2e-55 219.9 137 80.3
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 1.2e-55 219.9 137 80.3
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 1.5e-55 219.5 137 78.1
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 1.5e-55 219.5 137 78.8
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 1.5e-55 219.5 137 75.2
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.5e-55 219.5 137 78.8
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 2.6e-55 218.8 137 76.6
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.5e-55 218.4 137 76.6
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 4.5e-55 218.0 137 77.4
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 5.9e-55 217.6 137 75.9
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.0e-54 216.9 137 77.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 1.7e-54 216.1 137 78.1
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.2e-54 215.7 137 75.9
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 2.2e-54 215.7 137 77.4
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 2.2e-54 215.7 137 75.9
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 2.9e-54 215.3 137 76.6
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 2.9e-54 215.3 137 75.2
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 2.9e-54 215.3 137 76.6
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 6.5e-54 214.2 137 75.9
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 6.5e-54 214.2 137 75.2
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 1.1e-53 213.4 137 77.4
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 1.1e-53 213.4 137 76.6
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 1.5e-53 213.0 137 74.5
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.9e-53 212.6 137 76.6
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 2.5e-53 212.2 137 75.2
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 2.5e-53 212.2 137 75.2
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 4.2e-53 211.5 137 75.9
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 4.2e-53 211.5 136 76.5
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 4.2e-53 211.5 137 73.7
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 4.2e-53 211.5 137 74.5
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 7.2e-53 210.7 137 74.5
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 7.2e-53 210.7 137 73.7
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 7.2e-53 210.7 137 73.7
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 7.2e-53 210.7 137 73.7
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 9.4e-53 210.3 137 73.7
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 9.4e-53 210.3 137 75.9
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 75.2
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 73.0
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 72.3
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 74.5
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 75.2
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 75.2
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 75.2
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 1.6e-52 209.5 137 75.2
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 2.1e-52 209.1 134 74.6
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 4.7e-52 208.0 137 72.3
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 6.1e-52 207.6 134 73.9
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 1.0e-51 206.8 137 72.3
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 1.4e-51 206.5 137 73.0
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.8e-51 206.1 137 73.0
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.8e-51 206.1 137 72.3
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 3.0e-51 205.3 137 73.7
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 3.0e-51 205.3 137 71.5
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 3.9e-51 204.9 134 72.4
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 3.9e-51 204.9 137 71.5
Aqoxy508s001 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 5.2e-51 204.5 136 71.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 5.2e-51 204.5 136 71.3
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 6.7e-51 204.1 137 72.3
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 8.8e-51 203.8 134 72.4
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 1.1e-50 203.4 137 70.8
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 1.5e-50 203.0 137 72.3
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 2.6e-50 202.2 137 70.1
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.3e-50 201.8 137 70.8
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 4.4e-50 201.4 138 73.9
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 4.4e-50 201.4 137 70.8
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 4.4e-50 201.4 138 73.2
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 4.4e-50 201.4 137 73.0
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 5.7e-50 201.1 137 68.6
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 7.4e-50 200.7 137 71.5
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 9.7e-50 200.3 137 70.8
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 1.3e-49 199.9 137 70.1
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 1.7e-49 199.5 137 69.3
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 1.7e-49 199.5 137 72.3
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 1.7e-49 199.5 138 72.5
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 2.2e-49 199.1 137 69.3
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 2.8e-49 198.7 138 69.6
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 3.7e-49 198.4 137 69.3
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 6.3e-49 197.6 136 67.6
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 6.3e-49 197.6 137 70.8
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 8.2e-49 197.2 136 68.4
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 8.2e-49 197.2 136 67.6
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 8.2e-49 197.2 137 68.6
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 1.8e-48 196.1 136 67.6
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 2.4e-48 195.7 137 68.6
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 3.1e-48 195.3 136 68.4
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 3.1e-48 195.3 146 68.5
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 4.1e-48 194.9 136 66.9
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 5.3e-48 194.5 135 67.4
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 9.1e-48 193.7 134 67.9
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 9.1e-48 193.7 134 67.9
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 9.1e-48 193.7 138 68.1
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 2.5e-45 185.7 136 64.0
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 9.4e-45 183.7 137 66.4
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 2.1e-44 182.6 137 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 3.6e-44 181.8 131 64.1
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 6.1e-44 181.0 137 66.4
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 1.8e-43 179.5 119 70.6
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 5.2e-43 177.9 136 60.3
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 5.2e-43 177.9 137 64.2
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 8.8e-43 177.2 137 64.2
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.5e-42 176.4 133 61.7
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 2.0e-42 176.0 137 64.2
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 2.0e-42 176.0 132 62.9
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 2.6e-42 175.6 125 67.2
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 5.7e-42 174.5 119 68.1
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 7.5e-42 174.1 119 68.1
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.8e-41 172.2 122 69.7
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 6.3e-41 171.0 130 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 5.4e-40 167.9 131 59.5
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 5.9e-39 164.5 137 56.2
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.7e-38 162.9 134 58.2
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-37 159.8 130 59.2
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 1.9e-37 159.5 175 50.9
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.5e-37 159.1 118 63.6
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 4.7e-36 154.8 106 67.9
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 1.4e-35 153.3 132 54.5
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 4.0e-35 151.8 133 54.1
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 6.6e-30 134.4 142 51.4
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.0e-22 110.5 87 59.8
CSS0021951 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 6.6e-22 107.8 68 76.5
PSO541G3367 Papaver somniferum HOM05D003563 ORTHO05D005325 1.5e-18 96.7 74 64.9
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 6.4e-17 91.3 72 61.1
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 5.4e-16 88.2 72 61.1
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.3e-14 83.6 145 35.2
CSS0046775 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 8.9e-11 70.9 53 62.3
GSVIVG01025961001 Vitis vinifera HOM05D003563 ORTHO05D011281 1.2e-10 70.5 51 68.6
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 2.2e-09 66.2 111 36.0
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 3.7e-09 65.5 43 65.1
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.4e-08 62.8 114 32.5
Gorai.009G203000 Gossypium raimondii HOM05D003563 ORTHO05D034044 6.0e-07 58.2 57 54.4
Gohir.D05G197950 Gossypium hirsutum HOM05D003563 ORTHO05D034044 5.1e-06 55.1 57 52.6
Rhsim08G0102600 Rhododendron simsii HOM05D003563 ORTHO05D339399 5.1e-06 55.1 45 60.0


User provided reference genes

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