Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.7e-32 142.1 74 100.0
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 9.3e-31 136.3 71 98.6
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 2.3e-29 131.7 71 95.8
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 8.7e-29 129.8 74 90.5
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 3.3e-28 127.9 71 93.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 4.3e-28 127.5 71 93.0
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 5.6e-28 127.1 71 93.0
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.1e-26 122.9 74 85.1
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 4.0e-26 120.9 71 85.9
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.6e-25 118.2 65 92.3
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 2.6e-25 118.2 71 84.5
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.4e-25 117.9 71 85.9
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 3.4e-25 117.9 74 85.1
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 4.4e-25 117.5 71 87.3
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 4.4e-25 117.5 74 81.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.8e-25 117.1 71 87.3
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.6e-25 116.7 73 80.8
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.3e-24 115.9 71 85.9
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.7e-24 115.5 68 88.2
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-24 115.5 75 81.3
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.7e-24 115.5 71 83.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-24 115.2 71 85.9
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.2e-24 115.2 70 81.4
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 4.9e-24 114.0 75 84.0
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.9e-24 114.0 71 83.1
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 4.9e-24 114.0 60 93.3
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.4e-24 113.6 71 84.5
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 8.4e-24 113.2 71 84.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 8.4e-24 113.2 68 88.2
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 8.4e-24 113.2 70 80.0
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.1e-23 112.8 70 84.3
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-23 112.8 73 80.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.1e-23 112.8 73 80.8
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.1e-23 112.8 76 77.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.4e-23 112.5 71 81.7
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.4e-23 112.5 73 78.1
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-23 112.5 74 77.0
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.4e-23 112.5 71 83.1
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-23 112.1 73 82.2
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-23 112.1 73 82.2
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.9e-23 112.1 66 81.8
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 2.4e-23 111.7 61 90.2
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.4e-23 111.7 71 80.3
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.2e-23 111.3 81 75.3
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 3.2e-23 111.3 73 76.7
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.2e-23 111.3 71 81.7
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 3.2e-23 111.3 72 81.9
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.2e-23 110.9 70 81.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 4.2e-23 110.9 66 81.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.2e-23 110.9 68 83.8
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.2e-23 110.9 72 81.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 5.4e-23 110.5 73 78.1
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 5.4e-23 110.5 61 88.5
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 5.4e-23 110.5 77 74.0
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 7.1e-23 110.2 73 82.2
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 7.1e-23 110.2 58 94.8
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 7.1e-23 110.2 68 83.8
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 7.1e-23 110.2 71 83.1
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.3e-23 109.8 74 77.0
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 9.3e-23 109.8 70 82.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.2e-22 109.4 67 83.6
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.6e-22 109.0 67 82.1
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.6e-22 109.0 71 76.1
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 2.1e-22 108.6 67 82.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.1e-22 108.6 61 86.9
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 3.5e-22 107.8 74 75.7
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 6.0e-22 107.1 58 91.4
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 6.0e-22 107.1 71 76.1
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.8e-22 106.7 74 75.7
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 7.8e-22 106.7 74 71.6
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 7.8e-22 106.7 75 72.0
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.0e-21 106.3 64 81.2
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 64 84.4
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 64 84.4
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 76.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-21 105.9 74 77.0
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-21 105.9 60 85.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 1.3e-21 105.9 70 80.0
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.7e-21 105.5 67 82.1
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.7e-21 105.5 74 75.7
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 2.3e-21 105.1 79 70.9
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.9e-21 104.4 72 76.4
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.9e-21 104.4 64 78.1
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.9e-21 104.4 67 80.6
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 3.9e-21 104.4 68 82.4
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 5.1e-21 104.0 71 74.6
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.1e-21 104.0 71 77.5
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 5.1e-21 104.0 65 81.5
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 5.1e-21 104.0 61 86.9
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.6e-21 103.6 71 77.5
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.6e-21 103.6 65 75.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 74 70.3
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.5e-20 102.4 66 80.3
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 2.5e-20 101.7 61 85.2
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.5e-20 101.7 71 71.8
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 2.5e-20 101.7 65 80.0
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 2.5e-20 101.7 58 86.2
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 3.3e-20 101.3 69 79.7
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 3.3e-20 101.3 71 67.6
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 4.3e-20 100.9 58 87.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 4.3e-20 100.9 58 87.9
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 4.3e-20 100.9 74 73.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.3e-20 100.9 74 73.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.3e-20 100.9 74 73.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.3e-20 100.9 65 81.5
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 4.3e-20 100.9 68 79.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 5.6e-20 100.5 58 87.9
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 5.6e-20 100.5 61 80.3
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 65 78.5
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 7.3e-20 100.1 58 87.9
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 66 78.8
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 68.9
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 74.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-19 99.0 60 76.7
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 2.1e-19 98.6 58 86.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 58 84.5
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 55 89.1
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.6e-19 97.8 72 70.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.6e-19 97.8 74 71.6
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 3.6e-19 97.8 63 77.8
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 58 77.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.1e-18 96.3 66 72.7
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 1.8e-18 95.5 58 81.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 5.3e-18 94.0 66 68.2
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.9e-18 93.6 65 69.2
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.6e-17 91.7 56 80.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 3.4e-17 91.3 65 69.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 4.5e-17 90.9 54 81.5
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.3e-16 89.4 68 69.1
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.4e-15 85.1 65 64.6
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.4e-15 85.1 65 64.6
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.2e-15 84.7 60 73.3
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 5.4e-15 84.0 67 62.7
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 7.1e-15 83.6 55 74.5
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.2e-14 82.8 63 65.1
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.6e-14 82.4 69 60.9
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 2.1e-14 82.0 52 80.8
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 3.5e-14 81.3 71 56.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.0e-13 79.7 63 65.1
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.3e-13 79.3 59 71.2
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 2.3e-13 78.6 53 77.4
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.3e-13 78.6 54 70.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 3.0e-13 78.2 58 63.8
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 3.0e-13 78.2 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.0e-13 78.2 56 71.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 2.5e-12 75.1 64 57.8
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.5e-12 75.1 56 73.2
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 3.3e-12 74.7 65 56.9
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 7.4e-12 73.6 47 74.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 3.7e-11 71.2 70 50.0
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.9e-08 61.6 57 52.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 3.8e-08 61.2 34 85.3
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 4.2e-07 57.8 35 82.9
Gohir.A12G267900 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.5e-06 54.7 26 100.0


User provided reference genes

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