Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.4e-54 215.3 112 100.0
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 3.5e-50 201.4 109 94.5
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.0e-45 185.7 109 82.6
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.0e-44 181.0 109 86.2
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.2e-42 176.4 110 84.5
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 3.6e-42 174.9 109 78.0
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.3e-41 172.2 109 78.9
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.3e-41 172.2 109 78.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 3.9e-41 171.4 110 77.3
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 5.1e-41 171.0 110 77.3
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 8.2e-39 163.7 115 75.7
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.1e-35 153.3 108 73.1
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.2e-29 133.3 109 60.6
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 3.4e-29 131.7 109 64.2
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.7e-29 130.6 109 59.6
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 6.5e-28 127.5 109 57.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.2e-27 125.2 109 60.6
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 9.4e-27 123.6 109 60.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.6e-26 122.9 106 62.3
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.6e-26 121.7 108 60.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.3e-25 119.0 109 59.6
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 5.2e-25 117.9 109 59.6
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.2e-23 112.5 94 60.6
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.8e-22 109.4 110 52.7
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.7e-21 104.0 109 48.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.0e-20 103.6 108 51.9
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.7e-20 102.8 109 54.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.8e-20 101.7 109 49.5
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 3.8e-20 101.7 104 51.9
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-19 100.1 104 52.9
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 5.5e-19 97.8 110 52.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 7.2e-19 97.4 107 53.3
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 9.4e-19 97.1 112 47.3
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.6e-18 96.3 110 47.3
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 2.1e-18 95.9 86 54.7
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 2.1e-18 95.9 106 49.1
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.3e-17 92.4 83 54.2
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 3.0e-17 92.0 104 47.1
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 4.0e-17 91.7 107 45.8
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 5.2e-17 91.3 88 51.1
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 5.2e-17 91.3 88 53.4
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 5.2e-17 91.3 107 45.8
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 8.8e-17 90.5 100 50.0
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.2e-16 90.1 109 45.9
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.5e-16 89.7 109 45.9
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.4e-16 88.2 104 47.1
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.7e-15 86.3 84 48.8
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 1.7e-15 86.3 90 51.1
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 1.7e-15 86.3 90 51.1
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.4e-14 83.2 84 48.8
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 2.4e-14 82.4 114 40.4
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 3.1e-14 82.0 109 43.1
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 3.1e-14 82.0 109 43.1
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 4.1e-14 81.6 109 38.5
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.1e-14 81.6 83 45.8
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 9.1e-14 80.5 111 43.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 9.1e-14 80.5 114 41.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.7e-13 79.0 84 46.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.5e-13 78.6 112 42.0
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 3.5e-13 78.6 72 61.1
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 4.5e-13 78.2 95 49.5
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 7.7e-13 77.4 111 41.4
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 7.7e-13 77.4 109 40.4
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.7e-13 77.4 103 39.8
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-12 77.0 112 41.1
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.0e-12 77.0 88 44.3
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.3e-12 76.6 104 37.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.3e-12 76.6 93 41.9
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.2e-12 75.9 109 38.5
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.9e-12 75.5 88 43.2
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 3.8e-12 75.1 104 39.4
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 3.8e-12 75.1 75 53.3
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 3.8e-12 75.1 83 43.4
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 5.0e-12 74.7 83 44.6
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 6.5e-12 74.3 70 57.1
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 8.5e-12 73.9 110 37.3
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.1e-11 73.6 109 38.5
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-11 72.8 107 36.4
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.9e-11 72.8 104 40.4
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.5e-11 72.4 110 40.9
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 3.2e-11 72.0 110 40.0
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.2e-11 72.0 103 37.9
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 3.2e-11 72.0 103 36.9
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 4.2e-11 71.6 97 43.3
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 4.2e-11 71.6 110 40.0
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 4.2e-11 71.6 83 44.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 7.2e-11 70.9 83 42.2
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 7.2e-11 70.9 83 42.2
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-10 70.1 97 42.3
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-10 70.1 97 42.3
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-10 70.1 115 40.0
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-10 70.1 97 42.3
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.2e-10 70.1 115 40.0
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.2e-10 70.1 109 37.6
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.2e-10 70.1 107 35.5
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.2e-10 70.1 103 38.8
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-10 69.7 115 40.0
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-10 69.7 115 40.0
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.6e-10 69.7 115 40.0
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.1e-10 69.3 93 38.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.7e-10 68.9 115 39.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.7e-10 68.9 75 48.0
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.7e-10 68.9 109 36.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.6e-10 68.6 111 39.6
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 4.7e-10 68.2 85 42.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 6.1e-10 67.8 88 43.2
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 6.1e-10 67.8 106 39.6
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.0e-09 67.0 111 36.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 1.0e-09 67.0 106 36.8
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.0e-09 67.0 109 35.8
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.4e-09 66.6 83 39.8
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-09 66.6 103 36.9
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.8e-09 66.2 106 38.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.8e-09 66.2 88 43.2
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.8e-09 66.2 83 39.8
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.8e-09 66.2 89 42.7
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.8e-09 66.2 77 46.8
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.8e-09 66.2 109 38.5
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.3e-09 65.9 108 38.0
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.3e-09 65.9 75 45.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.0e-09 65.5 109 36.7
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 4.0e-09 65.1 104 35.6
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 5.2e-09 64.7 107 36.4
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.2e-09 64.7 102 38.2
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.8e-09 64.3 103 34.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 8.8e-09 63.9 109 35.8
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.2e-08 63.5 112 38.4
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.2e-08 63.5 106 34.0
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.2e-08 63.5 83 41.0
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.0e-08 62.8 89 41.6
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.0e-08 62.8 113 34.5
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.0e-08 62.8 86 38.4
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 2.6e-08 62.4 108 38.9
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.6e-08 62.4 104 35.6
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.4e-08 62.0 106 31.1
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.4e-08 62.0 75 41.3
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 3.4e-08 62.0 104 34.6
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 4.4e-08 61.6 105 36.2
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 5.7e-08 61.2 89 41.6
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.5e-08 60.8 105 35.2
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 7.5e-08 60.8 90 36.7
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.3e-07 60.1 104 35.6
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.3e-07 60.1 83 41.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.7e-07 59.7 104 34.6
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.7e-07 59.7 104 33.7
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.7e-07 59.7 107 32.7
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.8e-07 58.9 44 61.4
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 6.3e-07 57.8 105 32.4
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 8.3e-07 57.4 73 38.4
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.4e-06 55.8 78 39.7
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 3.1e-06 55.5 82 36.6
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 3.1e-06 55.5 109 32.1
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.4e-06 54.7 83 33.7


User provided reference genes

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