Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.5e-59 232.6 118 100.0
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.5e-22 109.8 68 79.4
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 6.2e-21 104.4 130 53.1
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-18 96.7 80 66.2
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-18 96.7 80 66.2
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 8.4e-18 94.0 65 70.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.1e-17 93.6 58 77.6
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.1e-17 93.6 133 49.6
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.4e-17 93.2 123 50.4
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 2.4e-17 92.4 127 48.0
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 5.4e-17 91.3 126 49.2
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.4e-17 91.3 125 44.8
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 4.6e-16 88.2 126 46.8
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.0e-16 87.8 105 53.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 7.9e-16 87.4 56 69.6
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.0e-15 87.0 126 46.0
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.3e-15 86.7 67 61.2
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.3e-15 86.7 67 61.2
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.3e-15 85.9 105 43.8
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.3e-15 85.9 136 45.6
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 3.9e-15 85.1 122 48.4
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 3.9e-15 85.1 103 50.5
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.9e-15 85.1 58 69.0
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.7e-15 84.3 130 43.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 8.7e-15 84.0 70 58.6
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.5e-14 83.2 121 43.8
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-14 83.2 72 58.3
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-14 83.2 72 58.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-14 82.8 66 60.6
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.9e-14 82.8 127 45.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-14 82.8 121 43.8
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.9e-14 82.8 121 43.8
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.9e-14 82.8 95 53.7
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.9e-14 82.8 95 53.7
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.5e-14 82.4 61 67.2
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.3e-14 81.6 82 54.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 4.3e-14 81.6 133 42.9
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 5.6e-14 81.3 56 60.7
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 7.4e-14 80.9 115 46.1
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-13 80.1 138 42.8
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.6e-13 79.7 59 64.4
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 2.1e-13 79.3 125 43.2
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.1e-13 79.3 90 52.2
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.8e-13 79.0 67 58.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.8e-13 79.0 67 58.2
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-13 79.0 63 60.3
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.7e-13 78.6 60 65.0
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 4.8e-13 78.2 133 39.8
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 4.8e-13 78.2 61 63.9
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.2e-13 77.8 103 52.4
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 8.1e-13 77.4 121 40.5
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.1e-13 77.4 67 58.2
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.1e-13 77.4 67 58.2
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.1e-13 77.4 67 58.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 8.1e-13 77.4 130 40.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 8.1e-13 77.4 71 57.7
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.1e-12 77.0 58 60.3
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.1e-12 77.0 114 43.0
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.1e-12 77.0 134 46.3
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.4e-12 76.6 57 64.9
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-12 76.6 67 56.7
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.8e-12 76.3 58 62.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.8e-12 76.3 113 48.7
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.4e-12 75.9 135 41.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.4e-12 75.9 119 45.4
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.4e-12 75.9 68 58.8
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.0e-12 75.1 58 58.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.3e-12 74.7 131 38.2
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 5.3e-12 74.7 115 40.9
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 5.3e-12 74.7 120 39.2
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 6.9e-12 74.3 77 49.4
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 9.0e-12 73.9 141 40.4
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.0e-12 73.9 106 46.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.5e-11 73.2 125 40.8
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.5e-11 73.2 120 42.5
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.5e-11 73.2 64 59.4
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.5e-11 73.2 56 60.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.5e-11 73.2 58 60.3
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 1.5e-11 73.2 67 53.7
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.5e-11 73.2 66 56.1
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.6e-11 72.4 52 67.3
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.4e-11 72.0 81 55.6
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.8e-11 71.2 54 64.8
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 5.8e-11 71.2 137 39.4
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.6e-11 70.9 120 41.7
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 7.6e-11 70.9 99 45.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 7.6e-11 70.9 58 55.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.9e-11 70.5 137 38.7
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.3e-10 70.1 60 56.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.7e-10 69.7 88 46.6
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 2.2e-10 69.3 51 60.8
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-10 68.9 102 40.2
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.9e-10 68.9 137 39.4
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 2.9e-10 68.9 58 53.4
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.9e-10 68.9 124 41.1
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 3.8e-10 68.6 112 35.7
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.9e-10 68.2 68 58.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.4e-10 67.4 60 58.3
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.4e-09 66.6 59 61.0
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.4e-09 66.6 59 61.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-09 66.2 52 61.5
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 1.9e-09 66.2 60 55.0
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.4e-09 65.9 48 62.5
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.4e-09 65.9 74 45.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.2e-09 65.5 106 41.5
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.2e-09 65.5 114 36.8
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 4.2e-09 65.1 48 62.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 4.2e-09 65.1 52 59.6
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.2e-09 65.1 49 61.2
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 4.2e-09 65.1 114 36.8
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 5.5e-09 64.7 52 59.6
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.5e-09 64.7 58 53.4
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 9.3e-09 63.9 121 41.3
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-08 63.5 54 61.1
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.2e-08 63.5 69 47.8
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.6e-08 63.2 59 50.8
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-08 63.2 52 57.7
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 60 53.3
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 60 53.3
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.6e-08 63.2 48 60.4
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 112 35.7
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-08 63.2 103 41.7
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.1e-08 62.8 102 38.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.1e-08 62.8 48 60.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.1e-08 62.8 48 60.4
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 2.1e-08 62.8 54 55.6
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.7e-08 62.4 48 60.4
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-08 62.0 51 58.8
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 4.6e-08 61.6 109 40.4
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 4.6e-08 61.6 53 58.5
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 6.0e-08 61.2 49 59.2
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.9e-08 60.8 112 34.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 7.9e-08 60.8 59 52.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-07 60.5 48 58.3
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-07 60.5 48 58.3
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.0e-07 60.5 48 58.3
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-07 60.1 48 58.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-07 60.1 97 40.2
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 1.8e-07 59.7 54 53.7
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 52 55.8
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 48 58.3
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 54 53.7
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 1.8e-07 59.7 54 53.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.3e-07 59.3 48 56.2
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 3.0e-07 58.9 49 55.1
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 3.9e-07 58.5 68 45.6
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 3.9e-07 58.5 52 55.8
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 3.9e-07 58.5 48 56.2
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.1e-07 58.2 57 52.6
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.1e-07 58.2 53 56.6
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 6.7e-07 57.8 100 39.0
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.7e-07 57.8 100 39.0
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-06 57.0 111 39.6
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.1e-06 57.0 65 46.2
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.5e-06 56.6 129 36.4
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.9e-06 56.2 56 51.8
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 2.5e-06 55.8 48 56.2
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 2.5e-06 55.8 57 50.9
VMungo1215G0977 Vigna mungo HOM05D002383 ORTHO05D002515 2.5e-06 55.8 56 55.4
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 3.3e-06 55.5 111 38.7
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 4.3e-06 55.1 108 37.0
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 5.6e-06 54.7 111 38.7
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 5.6e-06 54.7 111 38.7
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 5.6e-06 54.7 111 38.7
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 5.6e-06 54.7 52 53.8
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 5.6e-06 54.7 52 53.8


User provided reference genes

Program Settings