Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 9.7e-158 560.1 278 100.0
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 9.8e-134 480.3 262 91.2
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 5.2e-111 404.8 250 82.0
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 5.8e-110 401.4 264 76.9
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 4.9e-109 398.3 263 75.3
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 1.2e-107 393.7 264 74.2
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 8.1e-104 380.9 261 74.7
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 5.8e-102 374.8 262 73.7
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 2.2e-93 346.3 263 68.8
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 1.9e-92 343.2 281 64.8
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 1.9e-92 343.2 281 64.8
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 2.0e-86 323.2 266 64.7
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 6.0e-83 311.6 281 60.9
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 1.3e-69 267.3 265 52.5
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 2.9e-69 266.2 300 49.7
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 4.2e-68 262.3 312 49.7
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 3.6e-67 259.2 267 52.4
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 7.9e-67 258.1 264 51.5
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 1.4e-66 257.3 267 52.8
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 4.8e-64 248.8 308 46.1
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 6.3e-64 248.4 269 50.9
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 1.8e-63 246.9 269 50.9
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 3.1e-63 246.1 256 52.3
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 6.9e-63 245.0 269 50.6
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 2.9e-61 239.6 211 62.1
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 5.0e-61 238.8 273 50.2
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 5.0e-61 238.8 157 79.6
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 7.9e-59 231.5 272 47.1
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 8.8e-58 228.0 254 49.2
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 4.4e-57 225.7 268 49.3
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 3.7e-56 222.6 268 48.5
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 2.4e-55 219.9 274 47.4
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 2.4e-55 219.9 270 47.8
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 4.1e-55 219.2 277 46.6
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 5.3e-55 218.8 282 45.4
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 4.5e-54 215.7 288 45.5
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 7.7e-54 214.9 274 46.0
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 2.2e-53 213.4 268 46.3
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 3.8e-53 212.6 266 45.9
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 1.1e-52 211.1 275 48.4
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 5.5e-52 208.8 269 43.1
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 7.2e-52 208.4 269 46.1
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 4.7e-51 205.7 258 42.6
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 1.0e-50 204.5 294 43.9
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 1.4e-50 204.1 218 53.2
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 1.8e-50 203.8 279 41.9
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 3.0e-50 203.0 264 43.2
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 6.7e-50 201.8 253 46.6
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 1.5e-49 200.7 262 45.4
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 3.3e-49 199.5 283 41.0
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 4.4e-49 199.1 265 46.4
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 4.4e-49 199.1 268 44.0
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 5.7e-49 198.7 269 41.6
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 7.4e-49 198.4 274 44.9
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 2.8e-48 196.4 267 43.1
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 8.2e-48 194.9 265 42.3
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 2.4e-47 193.4 294 39.1
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 7.0e-47 191.8 267 43.4
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 7.0e-47 191.8 266 42.9
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 1.2e-46 191.0 263 45.2
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 1.6e-46 190.7 268 43.3
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 5.9e-46 188.7 311 38.3
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 1.0e-45 188.0 276 37.7
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.7e-45 187.2 301 35.9
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 2.9e-45 186.4 317 35.0
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 8.5e-45 184.9 284 39.1
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 8.5e-45 184.9 301 36.5
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 5.5e-44 182.2 280 41.8
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 7.2e-44 181.8 269 42.0
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 1.2e-43 181.0 254 42.9
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 1.8e-42 177.2 272 41.9
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 2.3e-42 176.8 284 37.3
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 4.0e-42 176.0 285 40.0
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 4.0e-42 176.0 278 40.6
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 4.0e-42 176.0 268 39.2
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 1.2e-41 174.5 300 38.0
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 1.2e-41 174.5 285 37.5
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 1.2e-41 174.5 284 38.4
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 4.4e-41 172.6 285 37.5
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 1.7e-40 170.6 311 36.3
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 5.3e-39 165.6 202 47.5
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 9.1e-39 164.9 272 35.7
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 1.2e-38 164.5 278 37.1
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 3.5e-38 162.9 308 37.0
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 1.0e-37 161.4 210 47.6
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 1.7e-37 160.6 251 37.5
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 3.8e-37 159.5 255 38.4
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 1.6e-35 154.1 262 38.2
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 4.0e-34 149.4 283 37.8
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 1.6e-30 137.5 233 39.1
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 2.7e-30 136.7 224 39.3
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.3e-29 134.4 203 39.4
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 5.0e-29 132.5 268 31.7
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 8.6e-29 131.7 261 34.9
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 1.9e-28 130.6 263 35.4
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 2.5e-28 130.2 223 38.6
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 3.6e-27 126.3 303 35.6
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.4e-26 124.4 106 54.7
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 2.3e-21 107.1 221 36.2
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.3e-16 91.3 170 37.6
Haze_13451 Corylus avellana HOM05D007438 ORTHO05D009395 3.7e-16 89.7 127 45.7
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 6.0e-14 82.4 56 71.4
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 6.6e-13 79.0 143 37.1
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 2.8e-11 73.6 69 49.3
Pp3c2_23860 Physcomitrium patens HOM05D007438 ORTHO05D009395 8.9e-10 68.6 253 27.3
Phvul.001G039800 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 4.1e-07 59.7 127 30.7
AUR62035610 Chenopodium quinoa HOM05D001099 ORTHO05D000958 5.4e-07 59.3 139 29.5
PGR042G1027 Punica granatum HOM05D000136 ORTHO05D000080 7.1e-07 58.9 100 35.0
Os11g0244200 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 9.2e-07 58.5 101 34.7
Lj7C245T6 Lonicera japonica HOM05D000136 ORTHO05D000080 2.1e-06 57.4 98 34.7
Nitab4.5_0000286g0060 Nicotiana tabacum HOM05D000136 ORTHO05D000080 2.1e-06 57.4 98 35.7
Peaxi162Scf00797g00012 Petunia axillaris HOM05D001099 ORTHO05D000958 2.1e-06 57.4 114 30.7
GSVIVG01038631001 Vitis vinifera HOM05D001099 ORTHO05D000958 2.1e-06 57.4 139 28.8
MD07G1298000 Malus domestica HOM05D001099 ORTHO05D000958 2.7e-06 57.0 141 29.8
Medtr1g015165 Medicago truncatula HOM05D000136 ORTHO05D000080 2.7e-06 57.0 98 32.7
Aqoxy2G01038 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 3.5e-06 56.6 121 28.9
CsaV3_4G035900 Cucumis sativus L. HOM05D000136 ORTHO05D000080 3.5e-06 56.6 173 26.0
SEGI_10361 Sequoiadendron giganteum HOM05D000136 ORTHO05D000958 3.5e-06 56.6 99 31.3
VMungo0647G2315 Vigna mungo HOM05D000136 ORTHO05D000080 3.5e-06 56.6 122 30.3
arahy.Tifrunner.gnm1.ann1.MVDL02 Arachis hypogaea HOM05D000136 ORTHO05D007933 4.6e-06 56.2 101 31.7
CDE02G4055 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 4.6e-06 56.2 100 31.0
AUR62006016 Chenopodium quinoa HOM05D001099 ORTHO05D000958 4.6e-06 56.2 96 32.3
Cc02_g23670 Coffea canephora HOM05D000136 ORTHO05D000080 4.6e-06 56.2 100 32.0
Glyma.18G010500 Glycine max HOM05D001099 ORTHO05D000958 4.6e-06 56.2 137 27.7
Phvul.001G039700 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 4.6e-06 56.2 127 29.1
Sc10g0005880 Simmondsia chinensis HOM05D000136 ORTHO05D007933 4.6e-06 56.2 94 34.0
vmacro01412 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 4.6e-06 56.2 98 34.7
Lj5g0025088 Lotus japonicus HOM05D000136 ORTHO05D000080 6.0e-06 55.8 121 29.8
vmacro01411 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 6.0e-06 55.8 98 33.7
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 6.0e-06 55.8 101 34.7
MSTRG.26985 Avicennia marina HOM05D001099 ORTHO05D000958 7.8e-06 55.5 139 28.1
CBR_g7966 Chara braunii HOM05D000505 ORTHO05D000301 7.8e-06 55.5 107 28.0
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 7.8e-06 55.5 97 33.0
Lj7C239T7 Lonicera japonica HOM05D000136 ORTHO05D000080 7.8e-06 55.5 98 33.7
Sed0005212 Sechium edule HOM05D000136 ORTHO05D000080 7.8e-06 55.5 98 33.7


User provided reference genes

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