Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.4e-84 316.2 155 100.0
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.8e-81 305.8 155 96.1
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-71 271.2 155 85.2
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-71 271.2 155 85.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 84.5
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 83.9
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.3e-68 262.3 147 87.1
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 80.6
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 80.0
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 79.4
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 80.0
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 74.2
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 76.1
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 75.5
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 76.8
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 74.8
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 74.2
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 76.1
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.6e-64 249.6 154 75.3
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 74.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 74.8
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 6.0e-64 247.7 152 75.0
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 73.5
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.0e-63 246.9 152 75.0
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 73.5
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 74.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 74.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 71.6
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 75.5
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 71.0
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.9
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 70.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 72.3
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 72.9
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 71.6
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 72.3
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 72.3
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 75.5
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 73.5
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 69.7
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 72.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 73.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 72.3
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 71.6
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 71.6
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 68.4
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 70.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 69.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 69.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 70.3
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 71.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 68.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 69.7
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.9
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.4e-59 231.9 155 69.7
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 72.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 72.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.4e-59 231.5 152 71.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 67.7
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 69.7
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 71.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 71.6
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 67.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 67.7
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 2.2e-58 229.2 174 66.1
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 67.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 70.3
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.9e-57 226.1 155 69.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.9e-57 226.1 155 67.1
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 68.4
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 68.4
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.6e-56 223.0 156 68.6
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.6e-56 223.0 156 68.6
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.7e-56 222.2 153 67.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.0e-56 221.1 145 71.0
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 68.4
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 66.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 68.4
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 68.4
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 66.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.5e-54 216.5 152 65.1
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.9e-54 216.1 155 64.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 61.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 66.5
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.1e-53 212.6 135 71.9
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-53 212.6 147 69.4
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.1e-53 212.6 155 64.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.8e-53 212.2 154 64.9
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 4.7e-53 211.5 145 66.9
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 6.2e-53 211.1 151 66.9
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 67.1
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 133 72.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 4.0e-52 208.4 156 64.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.2e-52 208.0 150 68.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.2e-51 206.8 155 64.5
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.5e-51 206.5 133 72.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 2.6e-51 205.7 156 63.5
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.6e-51 205.7 156 63.5
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.4e-51 205.3 127 73.2
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.4e-51 205.3 146 67.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 4.4e-51 204.9 214 51.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 7.6e-51 204.1 156 62.8
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-50 203.0 150 67.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.9e-50 202.2 155 60.6
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.8e-50 201.8 156 62.2
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 5.4e-49 198.0 146 64.4
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.6e-48 196.4 155 62.6
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 3.5e-48 195.3 153 59.5
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.3e-47 193.4 156 60.9
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 8.7e-47 190.7 188 51.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 7.3e-46 187.6 162 59.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 4.8e-45 184.9 148 60.8
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 6.2e-45 184.5 152 56.6
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 8.1e-45 184.1 154 55.8
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.1e-44 183.7 154 55.2
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.1e-44 183.7 154 55.8
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.4e-44 183.3 154 55.8
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 4.4e-43 178.3 153 55.6
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.9e-41 172.9 128 60.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.9e-41 172.9 114 72.8
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.3e-39 166.8 153 55.6
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 8.7e-39 164.1 106 70.8
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.9e-38 162.9 106 69.8
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.3e-37 160.2 99 77.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 9.0e-36 154.1 144 50.0
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.5e-35 153.3 103 68.9
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 3.4e-35 152.1 89 78.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.9e-34 149.1 104 70.2
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.0e-31 140.6 152 51.3
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.5e-30 136.7 152 46.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-30 136.3 109 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 5.6e-30 134.8 137 50.4
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 6.2e-29 131.3 128 51.6
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 3.1e-28 129.0 83 72.3
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-23 111.3 68 80.9
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-22 110.5 61 85.2
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-22 110.5 61 85.2
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.2e-19 100.5 153 36.6
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.5e-19 100.1 128 39.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 5.5e-17 91.7 50 82.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 3.5e-16 89.0 129 34.9
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.0e-12 74.3 68 54.4
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 6.5e-10 68.2 118 31.4


User provided reference genes

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