Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 0.0e+00 1128.6 706 100.0
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.7e-278 961.4 713 85.7
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 1.6e-257 892.9 713 78.0
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 3.7e-246 855.1 713 77.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 5.3e-208 728.4 708 68.5
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 3.0e-203 712.6 685 69.3
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 3.1e-200 702.6 689 65.2
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 4.5e-199 698.7 699 68.1
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.9e-197 693.3 681 67.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 7.1e-189 664.8 681 65.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 7.4e-186 654.8 748 63.9
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 2.6e-159 566.6 719 55.1
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.2e-157 559.7 736 50.7
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 3.6e-156 556.2 693 54.8
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.6e-154 550.1 725 50.3
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.7e-153 547.4 715 55.8
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.4e-152 543.5 703 53.1
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.4e-152 543.5 703 53.1
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.4e-152 543.5 742 52.4
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.4e-152 543.5 703 56.0
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 7.0e-152 542.0 720 52.9
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.2e-150 537.0 660 61.5
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.2e-150 537.0 530 66.2
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.9e-150 536.6 708 54.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.7e-148 529.3 709 51.2
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.1e-148 528.9 689 50.2
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 8.0e-148 528.5 700 50.6
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 5.7e-146 522.3 740 47.8
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 7.5e-146 521.9 691 49.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.4e-144 516.9 701 50.1
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 4.1e-144 516.2 727 53.6
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 4.1e-144 516.2 734 50.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.0e-144 515.4 750 49.2
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 7.0e-144 515.4 717 53.4
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.5e-143 513.1 726 48.9
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.9e-143 512.3 670 50.4
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 7.7e-143 511.9 722 52.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.7e-142 510.8 682 52.6
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.1e-141 508.1 719 49.5
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.5e-141 507.7 686 51.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.2e-140 504.6 740 51.1
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.4e-139 501.1 720 53.5
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 6.8e-139 498.8 696 49.3
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 6.8e-139 498.8 742 50.9
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.5e-138 497.7 731 51.8
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 2.6e-138 496.9 702 51.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 2.6e-138 496.9 756 49.7
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.4e-138 496.1 720 52.6
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.2e-137 493.8 735 47.8
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 5.4e-136 489.2 755 50.7
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.6e-135 487.6 703 51.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 5.9e-135 485.7 729 50.6
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.0e-134 485.0 719 48.4
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.8e-134 483.0 676 51.8
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 3.6e-132 476.5 724 47.9
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 5.7e-130 469.2 734 50.8
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 2.2e-129 467.2 734 47.5
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 2.9e-129 466.8 707 49.5
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 3.7e-129 466.5 713 52.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.1e-128 464.9 527 52.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 3.9e-126 456.4 656 53.0
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 7.3e-125 452.2 723 49.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.4e-123 448.0 683 49.6
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.8e-123 447.6 668 55.5
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.8e-123 445.7 673 52.7
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 9.8e-122 441.8 507 53.8
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.7e-121 441.0 739 43.0
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 4.9e-121 439.5 745 50.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.1e-120 436.4 702 50.4
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.6e-119 433.0 677 54.8
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 7.8e-119 432.2 703 50.1
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 8.6e-118 428.7 748 43.3
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 8.6e-118 428.7 777 43.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.5e-117 427.2 732 48.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.5e-117 427.2 717 44.6
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.8e-116 423.7 715 53.6
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 7.5e-114 415.6 772 50.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.2e-113 414.1 785 42.2
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.1e-112 411.8 733 44.9
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.9e-112 411.0 749 47.4
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.0e-110 405.2 522 51.7
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.3e-110 404.1 708 41.7
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 6.6e-110 402.5 717 49.1
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 6.6e-110 402.5 727 52.4
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 8.6e-110 402.1 526 51.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.6e-110 402.1 535 54.2
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.5e-109 401.4 717 48.3
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.6e-108 397.9 709 52.6
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-107 395.2 726 46.6
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.0e-106 391.0 710 51.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 5.8e-106 389.4 515 50.9
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 3.2e-104 383.6 691 47.3
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 9.2e-104 382.1 290 67.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.2e-103 381.7 717 51.6
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.8e-103 379.0 432 58.6
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 9.9e-98 362.1 725 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.3e-97 361.7 707 44.4
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 3.8e-97 360.1 619 42.8
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.4e-91 341.7 594 44.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.9e-89 334.0 694 42.5
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.2e-87 328.6 682 43.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.6e-87 326.6 586 43.3
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 8.1e-84 315.8 688 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.2e-82 312.0 705 39.1
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 3.2e-80 303.9 381 53.8
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 7.9e-79 299.3 390 55.6
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.0e-74 284.6 538 39.0
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.2e-72 276.9 486 47.9
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 2.8e-68 264.2 830 35.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 8.4e-65 252.7 217 62.2
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.1e-64 252.3 310 51.6
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 2.1e-55 221.5 722 32.0
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.6e-55 220.3 190 58.4
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.0e-53 214.9 189 57.1
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.7e-47 194.5 518 34.2
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.7e-46 189.9 286 44.1
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.0e-45 188.3 341 36.7
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 8.2e-44 183.0 425 33.9
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.6e-42 177.9 505 33.5
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.7e-39 167.9 400 32.8
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.7e-39 167.2 259 56.0
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 7.5e-37 159.8 294 50.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.5e-32 145.6 299 41.1
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 5.4e-27 127.1 111 55.9
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 7.0e-27 126.7 187 40.1
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.0e-25 120.6 257 43.2
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 8.5e-25 119.8 90 68.9
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-23 115.9 270 31.5
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 8.8e-22 109.8 77 64.9
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.6e-21 108.2 233 39.9
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 9.8e-21 106.3 103 61.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.3e-20 105.9 186 41.4
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.2e-18 99.4 119 53.8
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.7e-17 95.5 171 43.9
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.8e-17 94.4 152 42.8
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 5.0e-17 94.0 158 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.0e-15 86.7 295 30.5
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.4e-13 81.3 107 43.0
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 7.5e-13 80.1 206 31.6
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.7e-12 79.0 143 36.4
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.6e-10 72.4 67 52.2
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 2.3e-09 68.6 59 59.3
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.3e-08 64.3 73 42.5
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 2.8e-07 61.6 37 73.0
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.6e-07 61.2 61 62.3
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 4.7e-07 60.8 55 54.5
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.2e-07 60.5 69 46.4
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.2e-07 60.5 69 42.0
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.2e-07 60.5 69 42.0
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 1.0e-06 59.7 124 39.5
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 3.1e-06 58.2 69 40.6
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.1e-06 58.2 49 51.0


User provided reference genes

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