Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.1e-112 409.1 211 100.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.1e-92 343.6 211 82.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 3.5e-91 338.6 207 85.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.7e-90 336.3 209 80.9
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.2e-88 330.1 209 82.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.6e-88 329.7 210 80.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.1e-88 329.3 210 80.5
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 4.7e-88 328.2 208 80.8
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.8e-87 326.2 208 79.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 4.0e-87 325.1 207 80.2
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.2e-87 324.7 207 80.2
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 6.8e-87 324.3 207 79.7
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.8e-87 324.3 202 83.2
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.2e-86 323.6 209 78.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.6e-86 322.4 203 81.3
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.6e-86 322.4 208 79.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.6e-86 322.4 202 82.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.4e-86 322.0 198 82.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.4e-86 322.0 210 76.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.4e-86 322.0 212 77.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.8e-86 321.2 210 80.5
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.9e-86 320.5 202 82.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 9.9e-86 320.5 207 77.3
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.3e-85 320.1 213 79.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.7e-85 319.7 211 77.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.9e-85 318.2 210 76.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.4e-85 317.8 201 79.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.4e-85 317.8 206 79.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 8.3e-85 317.4 213 78.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.9e-84 316.2 192 83.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.4e-84 315.8 199 77.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.1e-84 315.1 207 79.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 7.1e-84 314.3 213 77.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 9.2e-84 313.9 213 77.9
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 9.2e-84 313.9 196 79.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.6e-83 313.2 206 78.6
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.6e-83 313.2 213 78.4
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.7e-83 312.4 202 79.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.7e-83 312.4 213 77.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.0e-82 310.5 211 76.3
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.3e-82 309.3 208 77.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.3e-82 309.3 212 74.1
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.3e-82 309.3 208 76.4
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-82 308.5 210 77.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-82 308.5 210 77.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 6.6e-82 307.8 200 78.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-81 306.6 202 77.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.5e-81 306.6 180 85.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-81 306.6 205 75.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.9e-81 306.2 196 81.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.3e-81 305.4 200 79.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.3e-81 305.4 212 77.4
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.3e-81 305.4 200 77.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.6e-80 303.1 214 75.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.6e-80 303.1 199 78.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.8e-80 302.4 187 81.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.6e-80 302.0 226 71.7
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.8e-79 299.7 217 73.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.4e-79 299.3 198 78.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.0e-79 298.5 213 73.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-78 297.0 197 74.6
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.2e-78 297.0 177 83.1
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.4e-78 295.4 196 74.5
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 9.9e-78 293.9 207 71.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 9.9e-78 293.9 211 71.1
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.9e-78 293.9 211 71.1
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.2e-77 292.7 211 71.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.9e-77 292.4 211 70.6
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.9e-77 292.4 208 76.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.9e-77 292.4 211 71.6
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.9e-77 292.4 294 57.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 3.8e-77 292.0 211 70.6
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 4.9e-77 291.6 200 74.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.1e-76 290.4 195 75.4
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-76 290.4 203 75.9
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.9e-76 289.7 211 68.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.4e-76 289.3 211 70.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.4e-76 289.3 209 70.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 5.4e-76 288.1 211 71.6
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 7.1e-76 287.7 211 71.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.6e-75 286.6 210 71.0
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.5e-75 285.4 211 71.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.0e-75 284.6 160 88.1
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.3e-74 283.5 207 71.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.3e-74 282.7 200 75.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.3e-74 282.7 209 70.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 5.1e-74 281.6 211 70.1
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.1e-74 281.6 206 68.4
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.3e-73 278.9 217 69.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.3e-73 278.5 208 69.2
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 5.6e-73 278.1 200 70.5
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 7.3e-73 277.7 217 68.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 9.6e-73 277.3 162 84.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-72 276.9 211 68.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.6e-72 276.6 206 68.9
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.8e-72 275.8 208 65.9
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.6e-72 275.4 207 68.6
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 6.2e-72 274.6 206 65.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.8e-71 273.1 201 70.1
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.8e-71 273.1 206 65.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 3.1e-71 272.3 206 65.5
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 3.1e-71 272.3 199 73.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.0e-71 271.9 204 69.1
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.0e-71 270.8 206 67.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.3e-69 266.9 199 72.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.2e-69 266.2 207 66.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.2e-69 266.2 206 66.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.9e-69 265.0 195 72.8
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.4e-68 263.5 209 66.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.2e-68 262.3 200 66.5
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 4.2e-68 261.9 202 68.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.7e-67 259.2 197 65.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.5e-67 258.8 170 78.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.3e-66 256.1 174 71.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.0e-66 255.8 208 67.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.5e-65 252.7 192 68.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.5e-65 252.7 158 80.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.3e-65 252.3 174 69.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 5.6e-65 251.5 201 65.2
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.6e-64 250.0 169 75.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.9e-61 239.2 178 66.9
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.4e-61 237.7 190 66.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.3e-58 229.6 209 63.6
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.1e-56 221.1 128 84.4
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-54 216.9 127 84.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.4e-54 215.7 189 57.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 7.1e-52 208.0 124 80.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.0e-51 204.9 157 70.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.8e-48 196.1 200 55.0
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 3.1e-47 192.6 187 55.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.9e-47 191.4 194 58.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 5.0e-45 185.3 170 54.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 5.0e-45 185.3 119 75.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.2e-44 182.2 107 85.0
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.6e-43 180.3 109 84.4
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.5e-43 179.1 103 84.5
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.1e-43 178.3 150 57.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-40 170.6 180 52.8
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.7e-40 169.1 95 85.3
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.0e-34 151.0 149 50.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 3.0e-34 149.4 172 47.1
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.7e-34 148.3 173 51.4
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.7e-32 142.5 107 69.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.0e-23 111.7 213 39.4
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.7e-21 107.1 96 61.5
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.2e-20 101.7 78 62.8
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.4e-18 97.4 60 75.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.0e-18 96.3 72 62.5
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.7e-16 90.5 72 59.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.7e-16 90.5 170 34.1
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.3e-15 85.5 93 49.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 7.7e-14 81.6 177 32.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 3.2e-12 76.3 47 80.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-10 70.5 40 82.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.2e-10 68.9 56 62.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 4.1e-07 59.3 38 76.3


User provided reference genes

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