Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 4.1e-60 234.6 122 100.0
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.4e-36 155.6 123 69.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.7e-35 152.1 122 72.1
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 4.6e-35 151.4 122 69.7
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.7e-34 149.4 122 68.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.3e-34 149.1 122 70.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 6.6e-34 147.5 120 68.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 6.6e-34 147.5 120 68.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 8.6e-34 147.1 122 67.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 8.6e-34 147.1 122 68.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 8.6e-34 147.1 122 68.0
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 8.6e-34 147.1 122 68.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.9e-33 146.0 123 67.5
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.3e-33 144.8 122 64.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 4.3e-33 144.8 124 66.1
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.3e-33 144.1 126 66.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 9.6e-33 143.7 122 63.9
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.2e-32 143.3 114 68.4
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.1e-32 142.5 126 65.1
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.1e-32 142.5 96 75.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 3.6e-32 141.7 122 67.2
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 3.6e-32 141.7 105 70.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 4.7e-32 141.4 122 63.1
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 4.7e-32 141.4 107 67.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.7e-32 141.4 122 64.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 4.7e-32 141.4 124 62.9
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.7e-32 141.4 126 62.7
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.2e-32 141.0 122 63.1
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 8.1e-32 140.6 123 63.4
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 8.1e-32 140.6 123 61.8
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-31 140.2 122 63.1
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.4e-31 139.8 123 66.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-31 139.8 126 63.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-31 139.4 122 62.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.8e-31 139.4 123 63.4
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.4e-31 139.0 81 85.2
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.4e-31 139.0 80 83.8
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.4e-31 139.0 122 62.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 4.0e-31 138.3 122 64.8
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 5.2e-31 137.9 102 68.6
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 6.8e-31 137.5 122 63.1
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 8.9e-31 137.1 80 82.5
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-30 136.7 80 82.5
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.2e-30 136.7 122 64.8
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.5e-30 136.3 80 82.5
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.6e-30 135.6 125 62.4
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 3.4e-30 135.2 114 65.8
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 3.4e-30 135.2 122 60.7
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.4e-30 134.8 123 64.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 5.8e-30 134.4 123 63.4
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.8e-30 134.4 123 63.4
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.3e-29 133.3 126 63.5
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.3e-29 133.3 122 60.7
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.7e-29 132.9 125 59.2
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.7e-29 132.9 121 63.6
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-29 132.5 125 60.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.2e-29 132.5 118 63.6
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.2e-29 132.5 122 64.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-29 132.1 125 60.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.9e-29 132.1 131 58.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.8e-29 131.7 121 62.8
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.9e-29 131.3 126 60.3
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 4.9e-29 131.3 96 69.8
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 4.9e-29 131.3 122 57.4
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.9e-29 131.3 79 78.5
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.9e-29 131.3 79 78.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 6.4e-29 131.0 122 62.3
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 8.4e-29 130.6 122 61.5
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 8.4e-29 130.6 107 64.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.1e-28 130.2 116 61.2
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.4e-28 129.8 79 81.0
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.9e-28 129.4 122 61.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.9e-28 129.4 122 61.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.9e-28 129.4 122 61.5
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.9e-28 129.4 94 67.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.4e-28 129.0 128 58.6
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.4e-28 129.0 88 72.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.1e-28 127.5 79 77.2
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 9.3e-28 127.1 118 61.9
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.2e-27 126.7 73 86.3
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.6e-27 126.3 124 62.9
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.6e-27 126.3 120 61.7
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.6e-27 126.3 79 77.2
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.1e-27 125.9 83 72.3
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.1e-27 125.9 107 64.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.7e-27 125.6 117 62.4
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.7e-27 125.6 119 61.3
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.5e-27 125.2 76 80.3
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 4.6e-27 124.8 115 60.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.6e-27 124.8 123 61.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.6e-27 124.8 76 77.6
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 6.0e-27 124.4 121 62.8
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.0e-26 123.6 80 77.5
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-26 123.2 115 60.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 79 75.9
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.7e-26 122.9 115 60.9
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.3e-26 122.5 124 58.1
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.9e-26 121.7 120 60.8
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.9e-26 121.7 120 60.8
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.9e-26 121.7 120 60.8
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 5.1e-26 121.3 109 63.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 5.1e-26 121.3 109 63.3
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 8.7e-26 120.6 109 63.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 8.7e-26 120.6 75 77.3
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 8.7e-26 120.6 120 60.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.5e-25 119.8 80 75.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.5e-25 119.8 120 55.8
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.5e-25 119.0 115 60.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-25 119.0 86 72.1
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.3e-25 118.6 121 58.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 9.6e-25 117.1 156 52.6
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.6e-24 116.3 80 72.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.6e-24 116.3 73 74.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.1e-24 115.9 103 57.3
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.8e-24 114.8 73 76.7
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.1e-23 113.6 124 52.4
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.1e-23 112.1 100 65.0
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.2e-22 110.2 64 81.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.5e-22 109.8 64 82.8
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 2.6e-22 109.0 100 62.0
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.4e-22 108.6 73 71.2
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.1e-20 103.6 75 66.7
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.4e-20 101.3 117 44.4
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 7.1e-20 100.9 59 81.4
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.0e-19 97.8 100 61.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.3e-18 96.7 71 64.8
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.5e-17 93.2 49 89.8
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.5e-17 93.2 95 54.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 3.3e-17 92.0 54 79.6
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 7.3e-17 90.9 122 49.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 7.3e-17 90.9 103 53.4
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.6e-16 88.6 55 78.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 2.6e-14 82.4 97 50.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 1.3e-13 80.1 109 45.0
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.9e-13 79.0 140 42.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 3.2e-12 75.5 47 72.3
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 5.3e-07 58.2 109 36.7
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 9.0e-07 57.4 80 38.8


User provided reference genes

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