Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.7e-54 215.7 107 100.0
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 1.2e-44 183.0 107 81.3
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.2e-44 183.0 107 81.3
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 4.7e-44 181.0 107 81.3
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 8.1e-44 180.3 107 79.4
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.1e-43 179.9 107 81.3
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 3.1e-43 178.3 105 81.9
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 6.8e-43 177.2 105 81.0
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 8.9e-43 176.8 105 80.0
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-42 176.0 105 78.1
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-42 176.0 105 78.1
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 78.1
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 80.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 80.0
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 2.6e-42 175.3 106 81.1
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 3.4e-42 174.9 107 78.5
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 3.4e-42 174.9 107 79.4
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 5.8e-42 174.1 105 80.0
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 78.5
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 79.4
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 7.6e-42 173.7 107 78.5
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 7.6e-42 173.7 105 78.1
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 9.9e-42 173.3 105 77.1
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 9.9e-42 173.3 105 77.1
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 77.1
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.2e-41 172.2 104 79.8
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 2.2e-41 172.2 107 75.7
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.9e-41 171.8 103 76.7
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 2.9e-41 171.8 105 78.1
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 8.4e-41 170.2 105 76.2
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 8.4e-41 170.2 107 74.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 1.1e-40 169.9 103 78.6
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.1e-40 169.9 105 76.2
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 1.1e-40 169.9 103 78.6
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.4e-40 169.5 103 78.6
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 74.3
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.9e-40 169.1 107 77.6
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.4e-40 168.7 105 76.2
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 2.4e-40 168.7 103 77.7
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.2e-40 168.3 105 76.2
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 3.2e-40 168.3 107 74.8
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 4.1e-40 167.9 107 75.7
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 5.4e-40 167.5 103 77.7
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 5.4e-40 167.5 105 79.0
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 5.4e-40 167.5 107 76.6
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.2e-39 166.4 107 75.7
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 75.2
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 78.1
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.6e-39 166.0 107 77.6
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 1.6e-39 166.0 107 74.8
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.1e-39 165.6 105 75.2
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 2.1e-39 165.6 107 74.8
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 76.2
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 3.5e-39 164.9 107 72.0
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 6.0e-39 164.1 103 74.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 7.8e-39 163.7 107 73.8
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 7.8e-39 163.7 107 76.6
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 7.8e-39 163.7 107 76.6
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 72.4
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 7.8e-39 163.7 107 76.6
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.3e-38 162.9 104 73.1
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 3.0e-38 161.8 107 74.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 3.9e-38 161.4 103 74.8
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 3.9e-38 161.4 105 73.3
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 3.9e-38 161.4 105 72.4
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 3.9e-38 161.4 105 72.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 5.1e-38 161.0 105 71.4
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 5.1e-38 161.0 107 73.8
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 8.6e-38 160.2 105 72.4
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.1e-37 159.8 103 73.8
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 71.4
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 2.5e-37 158.7 104 73.1
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 72.4
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 3.3e-37 158.3 107 70.1
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 71.4
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 7.3e-37 157.1 107 69.2
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 1.2e-36 156.4 105 71.4
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.2e-36 156.4 105 71.4
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.6e-36 156.0 107 72.9
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 70.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.8e-36 155.2 104 72.1
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.7e-36 154.5 107 72.0
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 70.5
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 69.5
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 67.6
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 67.6
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 6.2e-36 154.1 103 70.9
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 1.1e-35 153.3 105 66.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.1e-35 153.3 101 71.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 66.7
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 2.4e-35 152.1 105 70.5
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 9.0e-35 150.2 107 69.2
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.2e-34 149.8 107 69.2
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 1.5e-34 149.4 101 73.3
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 2.6e-34 148.7 106 64.2
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 1.3e-33 146.4 92 76.1
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 3.8e-33 144.8 103 65.0
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.2e-31 139.8 94 67.0
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 2.1e-31 139.0 102 65.7
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 2.7e-31 138.7 102 66.7
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 7.8e-31 137.1 109 67.0
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 7.8e-31 137.1 105 63.8
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 3.0e-30 135.2 133 51.9
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 6.6e-30 134.0 134 54.5
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.1e-29 133.3 105 61.9
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.9e-29 132.5 105 61.0
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.3e-28 129.8 77 79.2
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 2.8e-28 128.6 103 58.3
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.6e-28 128.3 76 81.6
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 8.1e-28 127.1 104 58.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.4e-27 125.6 100 59.0
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 2.4e-27 125.6 93 64.5
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 2.2e-25 119.0 78 73.1
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 3.8e-25 118.2 75 76.0
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 6.4e-25 117.5 90 58.9
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 8.4e-25 117.1 76 73.7
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.4e-24 115.5 70 80.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.1e-23 112.5 70 78.6
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 3.5e-23 111.7 96 54.2
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 4.6e-23 111.3 90 57.8
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 5.1e-22 107.8 86 62.8
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 1.5e-21 106.3 106 56.6
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.3e-20 103.2 105 55.2
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.8e-20 102.1 113 54.0
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 3.7e-20 101.7 79 63.3
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 3.7e-20 101.7 74 62.2
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.6e-18 95.5 68 61.8
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 3.0e-14 82.0 50 80.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 3.9e-14 81.6 82 56.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 9.6e-13 77.0 89 43.8
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 8.2e-12 73.9 46 71.7
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.3e-09 66.6 42 69.0
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 3.8e-09 65.1 43 74.4
Cre03.g183050 Chlamydomonas reinhardtii HOM05D005747 ORTHO05D007159 7.9e-07 57.4 98 34.7


User provided reference genes

Program Settings